Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001187-TA|BGIBMGA001187-PA|undefined
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.0  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   8.8  

>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 571 SVVSTASSNPTILNLLNSAPAAMTHVTSSTENSIDAHKLLGRVSLAGARLIAATTASHTI 630
           S +ST  +  T      +  A  T  T+   +S          S   A  IAAT A  T 
Sbjct: 291 SSLSTGKARTTEATTTGTTAATATTGTTEALSSQSVISNASTTSTTSATTIAATGA--TT 348

Query: 631 PTYTQQGVGVQVMSGYTRDSEAINVSSSESALLERLIGSDAPNASASQPQP 681
           PT T Q       S +     +IN +++ +   E ++ + A +A    P P
Sbjct: 349 PTDTTQATP----SSFVTSDASINTATTATIETEAIVSTSALSAFTETPSP 395


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 462  QPSPTTPRLSPQASTNQLLAQQLTNP--PQPLNTPKMQSAIIHIQHPLMSTASATQVQ 517
            +PSP+T  + P  ST  +     T P  P P  TP   S       P+  + S T ++
Sbjct: 1298 KPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTSTTPIKPSPSTTPIK 1355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257,540
Number of Sequences: 59808
Number of extensions: 656092
Number of successful extensions: 1623
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 6
length of query: 834
length of database: 16,821,457
effective HSP length: 88
effective length of query: 746
effective length of database: 11,558,353
effective search space: 8622531338
effective search space used: 8622531338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)