GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001187-TA|BGIBMGA001187-PA|undefined
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    35   0.040
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    34   0.070
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    31   0.66 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    30   1.1  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    29   2.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   6.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   8.1  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 27/128 (21%), Positives = 52/128 (40%)

Query: 548 TSLMXXXXXXXXXXXXXXXXXXKSVVSTASSNPTILNLLNSAPAAMTHVTSSTENSIDAH 607
           +S +                   S  ST S++PT  +L +S+  + +  +SST +S  A 
Sbjct: 72  SSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLAS 131

Query: 608 KLLGRVSLAGARLIAATTASHTIPTYTQQGVGVQVMSGYTRDSEAINVSSSESALLERLI 667
             +   SLA + + +++ AS +  + +         +  T  S A + S S +A      
Sbjct: 132 SSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSAT 191

Query: 668 GSDAPNAS 675
            S   ++S
Sbjct: 192 SSSLASSS 199



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 548 TSLMXXXXXXXXXXXXXXXXXXKSVVSTASSNPTILNLLNSAPAAMT---HVTSSTENSI 604
           +SL                    S+ STA+SN    + L S+    T     TSS+ +S 
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSST 216

Query: 605 DAHKLLGRVSLAGARL---IAATTASHTIPTYTQQGVGVQVMSGYTRDSEAINVSSSESA 661
            A       SLA + L    +AT  S +I +       +   +  T  + A   SSS   
Sbjct: 217 AASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQY 276

Query: 662 LLERLIGSDAPNAS 675
               L+ S  P+++
Sbjct: 277 NTSSLLPSSTPSST 290


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 34.3 bits (75), Expect = 0.070
 Identities = 41/227 (18%), Positives = 87/227 (38%), Gaps = 4/227 (1%)

Query: 457 TALKQQPSPT-TPRLSPQASTNQLLAQQLTNPPQPLNTPKMQSAIIHIQHPLMSTASATQ 515
           T+ +  PS T +  L   +S +  +    T+    +++  + S+         S +S+T 
Sbjct: 124 TSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTS 183

Query: 516 VQNIQYXXXXXXXXXXXXXXXXXXNPAITALVTSLMXXXXXXXXXXXXXXXXXXKSVVST 575
                                   +   ++ V S                     S+ ST
Sbjct: 184 SSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPST 243

Query: 576 ASSNPTILNLLNSAPAAMTHVTSSTENSIDAHKLLGRVS-LAGARLIAATTASHTIPTYT 634
           +SS+ +  + L+S+ ++ T  +SS+ +SI +       S  + +  I+++++S + PT T
Sbjct: 244 SSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTST 303

Query: 635 QQGVGVQVMSGYTRDS--EAINVSSSESALLERLIGSDAPNASASQP 679
              +     S  +  S   + ++SSS S        S   ++S+S P
Sbjct: 304 SSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSP 350


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 573 VSTASSNPTILNLLNSAPAAMTHVTSSTENSIDAHKLLGRVSLAGARLIAATTASHTIPT 632
           ++TAS + +  ++ +++ A +T+VTS  E +I A   L + S   A L    +  H  P+
Sbjct: 152 LNTASRSSSAHSVKSTSSATVTNVTSKKE-AISATTSLAQSSPNLASLSKQPSTVHA-PS 209

Query: 633 YTQQGVGVQVMSGYTRDSEAINVSS-SESALLERLIGSDAPNASASQPQPVCH 684
             Q+ +   ++S Y      ++ SS + +A  + L    + + ++SQP    H
Sbjct: 210 TRQRDLKSSILSLYASPRPQVSSSSITTNATYQNLPSPVSTSTTSSQPYGAFH 262


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 574 STASSNPTILNLLNSAPAAMTHVTSSTENSIDAHKLLGRVSLAGARLIAATTASHTIPTY 633
           S++S+N  IL    ++PA  +   S T  S+         + +   + A+TTAS T+P  
Sbjct: 193 SSSSTNTVILTTSVNSPAVSS---SETLTSVSITSTESAYTSSSVDIAASTTASSTLPVS 249

Query: 634 TQQG-VGVQVMSGYTRDSEAINVSSSESALLE 664
           T +  V        T  + +   SSS S L+E
Sbjct: 250 TSEATVSFSTDIPATPSTLSSPASSSSSYLVE 281


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 57  EELLSYIDNEELPVMLLDLLESEHSCLFYSGCIIAQIRDYRQA 99
           + +L YI  E +P   L++  +     FY GC+  +I D+RQ+
Sbjct: 93  KSILQYIRMELIPPDCLEVFRNS-DVKFYDGCLTVRIIDHRQS 134


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 13/187 (6%)

Query: 457 TALKQQPSPTTPRLSPQAST-----NQLLAQQLTNPPQPLNTPKMQSAIIHIQHPLMSTA 511
           + +   P+P+T  L   +S+     + +L+  ++  P   +     S++I     L+S++
Sbjct: 622 STILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSS 681

Query: 512 SATQVQNIQYXXXXXXXXXXXXXXXXXXNPAITALVTSLMXXXXXXXXXXXXXXXXXXKS 571
           S+  V +                     + +++ +  S +                   S
Sbjct: 682 SSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNS--S 739

Query: 572 VVSTASSNPTILNLLNSAPAAMTHVTSSTENS------IDAHKLLGRVSLAGARLIAATT 625
            + TASS+ T+L+ + S+ A ++  T S  +S        +   L   S     L  +++
Sbjct: 740 TLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSS 799

Query: 626 ASHTIPT 632
           +S TI T
Sbjct: 800 SSRTIST 806


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 26/174 (14%), Positives = 74/174 (42%), Gaps = 8/174 (4%)

Query: 507 LMSTASATQVQNIQYXXXXXXXXXXXXXXXXXXNPAITALVTSLMXXXX-XXXXXXXXXX 565
           ++ ++S++ + +                     +PA ++ +TSL+               
Sbjct: 40  VIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLT 99

Query: 566 XXXXKSVVSTASSNPTILNLLNSAPAAMTHVTSSTENSIDAHKLLGRVSLAGARLIAATT 625
                ++ S++S++PT  +  ++  ++ + + +S+ +S      +   SL+ +  + +++
Sbjct: 100 SSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSS-----GMSSSSLSHSSSVPSSS 154

Query: 626 ASHTIPTYTQQGV--GVQVMSGYTRDSEAINVSSSESALLERLIGSDAPNASAS 677
           +S+   + T  G+     ++S   RD  +I    S S + E +  +   N ++S
Sbjct: 155 SSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNWNSS 208


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,828
Number of Sequences: 5004
Number of extensions: 89953
Number of successful extensions: 286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 10
length of query: 834
length of database: 2,362,478
effective HSP length: 79
effective length of query: 755
effective length of database: 1,967,162
effective search space: 1485207310
effective search space used: 1485207310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)