GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001187-TA|BGIBMGA001187-PA|undefined
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    36   0.13 
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    32   1.6  
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541...    31   3.8  
10_05_0074 - 8865884-8866567,8866612-8866923                           30   8.7  
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158...    30   8.7  

>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 53  PYEE--EELLSYIDNEELPVMLLDLLESEHSCLFYSGCIIAQIRDYRQ------AYPSF- 103
           PY++  E+L S I++  LP  +LD + S+    +Y+G +I +IRDYR+        PS  
Sbjct: 104 PYDKASEKLFSAIESGRLPEDILDEIPSK----YYNGSVICEIRDYRKHASNQAPAPSAE 159

Query: 104 --LCDTHHVLLRPTNQSIITDAMCIGGRCGWSGEERSXXXXXXXXXXXXXXPPLCLDPRP 161
             L   + V L+ T ++++ D   +     WS  +                P LCLDP P
Sbjct: 160 LGLPVVNKVRLQMTFENVVRDIPRLSDD-SWSYRD---FMEAEARIVKVLQPALCLDPTP 215


>01_01_1220 +
           9862195-9862281,9862427-9862646,9862764-9862916,
           9863016-9863674,9863749-9863852,9863950-9864192,
           9864262-9864376,9864696-9864909,9864995-9865511,
           9866439-9866448,9867363-9867551,9867755-9868084,
           9868639-9868872,9869303-9869743
          Length = 1171

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 572 VVSTASSNPTILNLLNSAPAAMTHVTSSTENSIDAHKLLGRVSLAGARLIAATTASHTIP 631
           V S  +  P    ++NSAP  +T   SS + S  +  +LG  +L     I  +  S T  
Sbjct: 328 VCSGGNDGPNPYTVVNSAPWILTVAASSIDRSFHSTIVLGNGTLVKGIAINFSNQSITGG 387

Query: 632 TYTQQGVGVQVMSGYTRDSEAIN 654
            Y     G QV   YT  SEA N
Sbjct: 388 QYPLV-FGPQVAGRYTPVSEASN 409


>01_06_0561 +
           30251547-30252173,30252248-30252405,30253250-30254192,
           30254271-30254438,30254546-30254857,30255498-30255557,
           30255905-30255937,30256083-30256271
          Length = 829

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 592 AMTHVTSSTENSIDAHKLLGRVSLAGARLIAATTASHTIPTYTQQGVGVQVMSGYTRDSE 651
           A T V++ST+NS+     L  +S++ AR+I +   + T  T T+  VG+ +  GY     
Sbjct: 697 ASTIVSASTDNSLK----LWDLSMSQARIIDSPLRTFTGHTNTKNFVGLSISDGYIATGS 752

Query: 652 AINVSSSESALLERLI 667
             N     S  L R +
Sbjct: 753 ETNEEYFGSLTLVRKV 768


>10_05_0074 - 8865884-8866567,8866612-8866923
          Length = 331

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 615 LAGARLIAATTASHTIPTYTQQGVGVQVMSGYTRDSEAINVSSSESAL--LERLIGSDAP 672
           LA +   A TTAS T  T TQ G+GV+  S  +R  +A++  S  +      R +G  A 
Sbjct: 134 LAPSTEAAKTTASST-STATQHGLGVRFSSAISRRCDAVSAVSGANFADGWSRAMGGGAV 192

Query: 673 NASA 676
           + SA
Sbjct: 193 SLSA 196


>07_03_1520 +
           27415266-27415507,27415608-27415722,27415761-27415815,
           27415862-27417849,27418161-27418589
          Length = 942

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/71 (23%), Positives = 37/71 (52%)

Query: 61  SYIDNEELPVMLLDLLESEHSCLFYSGCIIAQIRDYRQAYPSFLCDTHHVLLRPTNQSII 120
           ++I+++ LPV+ + +LE+   C   +   I++ RD  Q    +  +T   +L+ ++  ++
Sbjct: 574 TFIEHDLLPVLGMSILETLAECDPDNCAEISRARDLIQKIIGYTNETQPKILKGSSLKLL 633

Query: 121 TDAMCIGGRCG 131
           T     GG  G
Sbjct: 634 TKLSNTGGEIG 644


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,028
Number of Sequences: 37544
Number of extensions: 589101
Number of successful extensions: 1441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 6
length of query: 834
length of database: 14,793,348
effective HSP length: 88
effective length of query: 746
effective length of database: 11,489,476
effective search space: 8571149096
effective search space used: 8571149096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)