GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001187-TA|BGIBMGA001187-PA|undefined
         (834 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    30   5.9  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    30   5.9  

>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 461 QQPSPTTPRLSPQASTNQLLAQQLTN---PPQPLNTPKMQSAIIHIQHPLMSTAS 512
           QQ  P+ PR    AST Q + QQ ++   PP P   P  +  ++H++    ST+S
Sbjct: 741 QQQHPSLPR---SASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSS 792


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 461 QQPSPTTPRLSPQASTNQLLAQQLTN---PPQPLNTPKMQSAIIHIQHPLMSTAS 512
           QQ  P+ PR    AST Q + QQ ++   PP P   P  +  ++H++    ST+S
Sbjct: 741 QQQHPSLPR---SASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSS 792


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,167,427
Number of Sequences: 27539
Number of extensions: 499251
Number of successful extensions: 1448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 2
length of query: 834
length of database: 12,573,161
effective HSP length: 87
effective length of query: 747
effective length of database: 10,177,268
effective search space: 7602419196
effective search space used: 7602419196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)