GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001187-TA|BGIBMGA001187-PA|undefined
         (834 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   4.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 478 QLLAQQLTNPPQPLNTPKMQSAIIHI--QHPLMSTASATQ 515
           QLL Q+   PP  L T  + S  I++  QH    T   T+
Sbjct: 901 QLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTK 940


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 478 QLLAQQLTNPPQPLNTPKMQSAIIHI--QHPLMSTASATQ 515
           QLL Q+   PP  L T  + S  I++  QH    T   T+
Sbjct: 897 QLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTK 936


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 586 LNSAPAAMTHVTSSTENSIDAHK 608
           LNSA  A+ H    T NS++ HK
Sbjct: 399 LNSAVCALCHKVFRTLNSLNNHK 421


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,654
Number of Sequences: 429
Number of extensions: 6022
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 834
length of database: 140,377
effective HSP length: 63
effective length of query: 771
effective length of database: 113,350
effective search space: 87392850
effective search space used: 87392850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)