GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001187-TA|BGIBMGA001187-PA|undefined
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72380.1 68414.m08372 expressed protein                             33   0.59 
At5g19900.1 68418.m02368 PRLI-interacting factor, putative stron...    30   7.3  

>At1g72380.1 68414.m08372 expressed protein
          Length = 190

 Score = 33.5 bits (73), Expect = 0.59
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 30  GYSLSLKVNGNMQYETLIETPR--WPYEE--EELLSYIDNEELPVMLLDLLESEHSCLFY 85
           GYS+  K +  MQ  +  + P+   PY+   E LLS I+   LP    D+LE +  C F 
Sbjct: 75  GYSIG-KTSEAMQQISFRDVPKVLHPYDRAAEGLLSAIEAGRLPG---DILE-DIPCKFV 129

Query: 86  SGCIIAQIRDYRQ 98
            G +I ++ DYR+
Sbjct: 130 DGVVICEVHDYRK 142


>At5g19900.1 68418.m02368 PRLI-interacting factor, putative strong
           similarity to PRLI-interacting factor A [Arabidopsis
           thaliana] GI:11139262
          Length = 494

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 472 PQASTNQLLAQQLTNPPQPLNTPKM--QSAIIHIQHPLM 508
           PQ    Q   QQ  NPP P   P++  QS ++   HP+M
Sbjct: 13  PQQMIGQPPPQQRMNPPPPSQVPRIMNQSPLLGQSHPIM 51


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,939
Number of Sequences: 28952
Number of extensions: 462224
Number of successful extensions: 1105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 2
length of query: 834
length of database: 12,070,560
effective HSP length: 87
effective length of query: 747
effective length of database: 9,551,736
effective search space: 7135146792
effective search space used: 7135146792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)