GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
         (78 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   0.87 
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   0.87 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   1.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   2.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   2.6  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    20   3.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    19   4.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    19   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   8.1  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 0.87
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 37  AFNVKITDNKKCLQYKTEVQQDVRKIDKFMS 67
           A ++K+TD    + Y   VQQ +R    F+S
Sbjct: 266 ALHIKLTDTAHMINYAFCVQQLLRITVAFIS 296


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 0.87
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 37  AFNVKITDNKKCLQYKTEVQQDVRKIDKFMS 67
           A ++K+TD    + Y   VQQ +R    F+S
Sbjct: 266 ALHIKLTDTAHMINYAFCVQQLLRITVAFIS 296


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
          growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 27 YSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDK 64
          Y  K    +G    +ITD +  LQY T +      ID+
Sbjct: 30 YDSKSHFRQGQAKFEITDLEPALQYCTHLIYGYAAIDE 67


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax
          protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 32 SHSKGAFNVKITDNKKCLQYKTEVQQDVR 60
          SH+ GA    +      L Y   V  DVR
Sbjct: 62 SHTDGASTPDVRPPSSSLSYGGPVNDDVR 90


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 32  SHSKGAFNVKITDNKKCLQYKTEVQQDVR 60
           SH+ GA    +      L Y   V  DVR
Sbjct: 218 SHTDGASTPDVRPPSSSLSYGGPVNDDVR 246


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 3.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 24  NTRYSVKYSHSKGAFNVKI 42
           N  Y V+Y   KGA N K+
Sbjct: 267 NVDYQVRYWLQKGAPNNKL 285



 Score = 18.6 bits (36), Expect = 8.1
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 20  QDPINTRYSVKYSHSKGAFNVKITD 44
           +DP        Y+ +KG   + I D
Sbjct: 382 EDPDTAGNKASYARAKGLGGIAIVD 406


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.4 bits (38), Expect = 4.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 58  DVRKIDKFMSNLLRHMASNDN 78
           D  K     SNLL    SNDN
Sbjct: 83  DPAKDPAIYSNLLPRPGSNDN 103


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 19.4 bits (38), Expect = 4.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 38  FNVKITDNKKCLQYKTE 54
           F+VK+  ++  + YKT+
Sbjct: 756 FDVKLQSDRLMIDYKTQ 772


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 25  TRYSVKYSHSK 35
           TRY ++Y  SK
Sbjct: 927 TRYMIEYKQSK 937


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.129    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,556
Number of Sequences: 317
Number of extensions: 610
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 78
length of database: 114,650
effective HSP length: 46
effective length of query: 32
effective length of database: 100,068
effective search space:  3202176
effective search space used:  3202176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)