Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
(78 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 29 0.098
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 26 0.52
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 25 0.91
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 25 0.91
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 25 1.6
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 25 1.6
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 24 2.8
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe... 24 2.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 23 4.9
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 23 6.4
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc... 22 8.5
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 22 8.5
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 22 8.5
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 22 8.5
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.098
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 5 PNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNV 40
P W E+EK ++ LY+ + I Y + G F++
Sbjct: 33 PTWVEWEKKSKRLYVANEIEEGYVAVFEWDNGKFSL 68
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 26.2 bits (55), Expect = 0.52
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 16 MLYLQDPINTRYSVKYSHSKGAFNVKITDNKK 47
ML++Q + TR ++ + S G F D++K
Sbjct: 597 MLFMQHYLRTRQAIMFRLSNGIFQFNFLDHRK 628
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 0.91
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 10 FEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKK 47
F +E++ L I Y + Y HS FNV IT N K
Sbjct: 226 FGLPSEVMPLFPQIEAVYEM-YPHSLPGFNVNITTNSK 262
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 0.91
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 43 TDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMAS 75
T NKK +V Q++ K K LL H AS
Sbjct: 120 TPNKKAFSASNDVYQNIIKASKESGALLMHEAS 152
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 29 VKYSHSKGAFNVKITDNKKCLQYK 52
+KY+ S +FN+ I DN K + K
Sbjct: 9 IKYAQSGDSFNILIKDNAKKITEK 32
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 24.6 bits (51), Expect = 1.6
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 21 DPINTRYSVKYSHSKGAFNVKITDNK---KCLQYKTEVQQDVRKIDKFMSNL 69
DP+ T Y+ + K FN I +K K L+ + + D ++DK + L
Sbjct: 17 DPLMTAYNESIHYDKRMFNADIDGSKAYAKALEQRGIISAD--ELDKMLDGL 66
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 23.8 bits (49), Expect = 2.8
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 EEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKI-TDNKKCLQYKTEVQQDVRKIDK 64
E+F + +L + P+N+R + ++KG + + I TD + E++ +V +++
Sbjct: 281 EQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVDFVEE 338
>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 23.8 bits (49), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 42 ITDNKKCLQYKTEVQQDVRKIDKFMS 67
IT CLQYK E++Q K MS
Sbjct: 46 ITTVDACLQYKKEIEQLDSKTTYLMS 71
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 23.0 bits (47), Expect = 4.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 7 WEEFEKAAEMLYLQDPINTRY 27
W E + A++ YL +N RY
Sbjct: 199 WTELYQGAKLFYLSGVLNGRY 219
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 22.6 bits (46), Expect = 6.4
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 35 KGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHM 73
KG K +NK C+ K++ ++ + +D+ ++ R +
Sbjct: 432 KGVKVSKSQENKNCISLKSDQRERMLNVDQCFTSKRRSL 470
>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 284
Score = 22.2 bits (45), Expect = 8.5
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 42 ITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMASND 77
IT KK K+ + D++ ++K + LL+H+ S+D
Sbjct: 3 ITSEKK-KNLKSLDKIDIKLLEKTIRALLQHIRSSD 37
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 22.2 bits (45), Expect = 8.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 11 EKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 45
E +LY I T Y KY+ SK F +N
Sbjct: 491 ETICNLLYQNPKIKTLYYPKYNTSKEHFEACRREN 525
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 22.2 bits (45), Expect = 8.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 28 SVKYSHSKGAFNVKITDNKKCLQYKTEVQQDV 59
S K S G+ N + CLQ K E+Q +
Sbjct: 21 SSKSSKKYGSQNKDSDSSSTCLQQKIEIQWSI 52
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 22.2 bits (45), Expect = 8.5
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 19 LQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMAS 75
L+ P T S SH + K+T + LQ+KT + + + K S L+H+++
Sbjct: 239 LRTPSRT-LSRSSSHYLWVRHGKLTRSVSLLQHKTPRRIRPKSLSKSNSTPLKHLSA 294
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.129 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,413
Number of Sequences: 5004
Number of extensions: 12224
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 14
length of query: 78
length of database: 2,362,478
effective HSP length: 58
effective length of query: 20
effective length of database: 2,072,246
effective search space: 41444920
effective search space used: 41444920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)
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