Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
(78 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711 44 1e-05
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 27 1.4
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 27 2.5
09_03_0080 + 12149885-12150842,12150936-12151007,12151129-121513... 27 2.5
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 27 2.5
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290... 26 4.4
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630... 26 4.4
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436... 26 4.4
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 25 5.8
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 25 7.7
>06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711
Length = 81
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 1 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQY 51
M + +W+EF + L+ P TRY VKY H +G +K+TDN + + +
Sbjct: 1 MVYFDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHENIHW 51
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 1 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 45
M+FV W E +E+ +L D + + K S G+ N N
Sbjct: 409 MSFVSGWNSAEVESEVTWLPDYADKAHDDKLSSQHGSLNGSFLSN 453
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 41 KITDNK----KCLQYKTEVQQDVRKIDKFMSNLLRHMASNDN 78
+ITDNK K +Q E++QD++ + N RH++S+ N
Sbjct: 201 QITDNKFWPVKGMQLVMELEQDLKVANVICMNGRRHVSSSKN 242
>09_03_0080 +
12149885-12150842,12150936-12151007,12151129-12151346,
12153607-12153830,12154004-12154592
Length = 686
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 YSHSKGAFNVKITDNKKCLQYKTEVQQD--VRKIDK 64
Y+ KG ++K +KKC+Q + + ++D R++DK
Sbjct: 412 YNELKGTESLKKIYDKKCVQLRHQFERDASARQVDK 447
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 9 EFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRK 61
+F + ++ ++ + ++ SH KG+ ++ T KK LQYK++++ +RK
Sbjct: 501 QFNPVDDNFFISGSLDEKVALVGSH-KGSCHLFDTTEKK-LQYKSQIELRIRK 551
>12_02_1084 -
25928373-25928426,25928551-25928652,25928913-25929039,
25929292-25930730,25931430-25931447
Length = 579
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 2 TFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN 39
T NW+E K +++ L+D ++T YSV + G F+
Sbjct: 44 TLNKNWKE--KISKIAALRDELSTIYSVVSASESGVFS 79
>12_02_0127 +
13961726-13961947,13962050-13962121,13962288-13963058,
13963401-13963573,13963973-13964083,13964114-13964460,
13964627-13964652
Length = 573
Score = 25.8 bits (54), Expect = 4.4
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 2 TFVPNWEE--FEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQ--Q 57
T + W E FEK A LY + + S++K VK+ D+ + YK+E+ Q
Sbjct: 479 TVLDTWSEYQFEKQATKLYTRKIFWAFQRILQSYTKYDVTVKVRDSIFEV-YKSEIHELQ 537
Query: 58 DVRK 61
D RK
Sbjct: 538 DFRK 541
>09_02_0108 -
4358051-4358645,4358722-4359137,4360307-4360903,
4361068-4361139,4361236-4361370,4361485-4361585,
4362719-4362863
Length = 686
Score = 25.8 bits (54), Expect = 4.4
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 2 TFVPNWEE--FEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQ--Q 57
T + W E FEK A LY + + S++K VK+ D+ + YK+E+ Q
Sbjct: 400 TVLDTWSEYQFEKQAAKLYTRKIFWAFQRILQSYTKYDVTVKVRDSIFEV-YKSEIHALQ 458
Query: 58 DVRK 61
D RK
Sbjct: 459 DFRK 462
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 41 KITDNKKCL-QYKTEVQQDVRKIDKFMSNLLRHM 73
K+ D KK +++ +V+ +K+D +NL++HM
Sbjct: 1025 KLQDTKKLAKEWEMKVKAFRKKLDDIQTNLVKHM 1058
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 7 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAF 38
W E ++ A++ YL I+ +Y+ + H+ F
Sbjct: 211 WAEIKEGAKLFYLSGLIHGKYTKREVHNLARF 242
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.129 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,702
Number of Sequences: 37544
Number of extensions: 58247
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 10
length of query: 78
length of database: 14,793,348
effective HSP length: 57
effective length of query: 21
effective length of database: 12,653,340
effective search space: 265720140
effective search space used: 265720140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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