GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
         (78 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.70 
SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)                  27   1.6  
SB_31327| Best HMM Match : GlcNAc_2-epim (HMM E-Value=4.3)             25   6.5  
SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)                      25   6.5  
SB_52171| Best HMM Match : PAN (HMM E-Value=0.11)                      25   8.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_11689| Best HMM Match : PAN (HMM E-Value=0.11)                      25   8.6  

>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 25  TRYSVKYSHSKG-AFNVKITDNKKCLQYKTEVQQDVRKIDKFMSN 68
           T YS++ S +K  AF  K+  +K+ L    EV++   K D+F SN
Sbjct: 353 TEYSIQSSRTKRVAFLKKLIADKESLHTLDEVEEGEDKQDEFSSN 397


>SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)
          Length = 415

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/57 (22%), Positives = 29/57 (50%)

Query: 6   NWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKI 62
           N+E  ++ +E +++  P  TRY  + S +  A++ K+   +K  Q    + Q +  +
Sbjct: 299 NFEITKEMSEKIFVIPPSRTRYLSEISENNRAYDKKVDAQEKVAQKLYGIYQTILSV 355


>SB_31327| Best HMM Match : GlcNAc_2-epim (HMM E-Value=4.3)
          Length = 220

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 14  AEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKK-CLQYKTE 54
           A +L + D +   YS   +++K  FNVK TD ++  +QY+T+
Sbjct: 114 ASLLDMFDQV-FEYSFGKTNNKTTFNVKQTDEQQDYIQYQTD 154


>SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)
          Length = 562

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 56  QQDVRKIDKFMSNLLRHMASNDN 78
           QQ    ++K+ +N  RH+ASN N
Sbjct: 384 QQSSSAVEKYSANNNRHIASNQN 406


>SB_52171| Best HMM Match : PAN (HMM E-Value=0.11)
          Length = 121

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 19 LQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLL 70
          L  PI   Y VK   S+G  + +   N++C+ Y  + +Q     +K +  LL
Sbjct: 50 LDVPIIDSYLVK---SEGLCSARCVRNRECVSYNLKKKQTTSCDEKILCELL 98


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 3    FVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRK 61
            F P  E F +A ++L   +P++ +  VK  +  G   +   +N+     K EV    +K
Sbjct: 1280 FQPVREAFTQAEDLLSFSEPLDRKADVKQMNQSGK-ELMGVENQSVTGIKDEVDSANKK 1337


>SB_11689| Best HMM Match : PAN (HMM E-Value=0.11)
          Length = 147

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 19  LQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLL 70
           L  PI   Y VK   S+G  + +   N++C+ Y  + +Q     +K +  LL
Sbjct: 76  LDVPIIDSYLVK---SEGLCSARCVRNRECVSYNLKKKQTTSCDEKILCELL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.129    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,120
Number of Sequences: 59808
Number of extensions: 79481
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 8
length of query: 78
length of database: 16,821,457
effective HSP length: 56
effective length of query: 22
effective length of database: 13,472,209
effective search space: 296388598
effective search space used: 296388598
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)