GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
         (78 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20998-1|AAA70170.1|   86|Homo sapiens signal recognition partic...    84   6e-17
BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition part...    84   6e-17
BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition part...    84   6e-17
BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition part...    84   6e-17
BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition part...    84   6e-17
EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition part...    54   9e-08
BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.         54   9e-08
BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.         54   9e-08
BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.         52   3e-07
BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.         52   3e-07
BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal recog...    42   2e-04
BC064142-1|AAH64142.1|  414|Homo sapiens chromosome 1 open readi...    27   9.1  
BC039109-1|AAH39109.1|  418|Homo sapiens C1orf177 protein protein.     27   9.1  
AK097520-1|BAC05087.1|  414|Homo sapiens protein ( Homo sapiens ...    27   9.1  

>U20998-1|AAA70170.1|   86|Homo sapiens signal recognition
          particle subunit 9 protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 66
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 67 SNLLRHMASND 77
          S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77


>BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition
          particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 66
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 67 SNLLRHMASND 77
          S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77


>BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition
          particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 66
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 67 SNLLRHMASND 77
          S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77


>BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition
          particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 66
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 67 SNLLRHMASND 77
          S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77


>BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition
          particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 66
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 67 SNLLRHMASND 77
          S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77


>EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition
          particle 9 kDa isoform protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 56
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 56
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 56
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.
          Length = 52

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 45
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.
          Length = 49

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 7  WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 45
          WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7  WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal
          recognition particle 9kD protein.
          Length = 45

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 42 ITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMASND 77
          +TD+  CL YKT+  QDV+KI+KF S L+R M + +
Sbjct: 1  VTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAKE 36


>BC064142-1|AAH64142.1|  414|Homo sapiens chromosome 1 open
          reading frame 177 protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 5  PNWEEFEKAAEMLYLQDPINTRYSVKYSH-SKGAFNVKIT 43
          PNW++F    E      P +TRYS + SH   G ++ K T
Sbjct: 43 PNWKKFSTFTEA-----PYSTRYSTQVSHIGPGTYSSKET 77


>BC039109-1|AAH39109.1|  418|Homo sapiens C1orf177 protein
          protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 5  PNWEEFEKAAEMLYLQDPINTRYSVKYSH-SKGAFNVKIT 43
          PNW++F    E      P +TRYS + SH   G ++ K T
Sbjct: 43 PNWKKFSTFTEA-----PYSTRYSTQVSHIGPGTYSSKET 77


>AK097520-1|BAC05087.1|  414|Homo sapiens protein ( Homo sapiens
          cDNA FLJ40201 fis, clone TESTI2020265. ).
          Length = 414

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 5  PNWEEFEKAAEMLYLQDPINTRYSVKYSH-SKGAFNVKIT 43
          PNW++F    E      P +TRYS + SH   G ++ K T
Sbjct: 43 PNWKKFSTFTEA-----PYSTRYSTQVSHIGPGTYSSKET 77


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.129    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,080,573
Number of Sequences: 224733
Number of extensions: 315058
Number of successful extensions: 910
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 14
length of query: 78
length of database: 73,234,838
effective HSP length: 57
effective length of query: 21
effective length of database: 60,425,057
effective search space: 1268926197
effective search space used: 1268926197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)