Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
(78 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22177-4|CAA80148.1| 76|Caenorhabditis elegans Hypothetical pr... 78 9e-16
Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical pr... 29 0.52
AC087081-6|AAG37976.1| 301|Caenorhabditis elegans Hypothetical ... 28 0.90
AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical... 27 1.2
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 2.8
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 26 2.8
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 25 4.8
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 25 4.8
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 25 4.8
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 25 4.8
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 25 4.8
AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna (prolife... 25 6.4
Z49969-4|CAA90268.1| 309|Caenorhabditis elegans Hypothetical pr... 25 8.4
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 25 8.4
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 25 8.4
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 25 8.4
AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical ... 25 8.4
AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical ... 25 8.4
>Z22177-4|CAA80148.1| 76|Caenorhabditis elegans Hypothetical
protein ZK512.4 protein.
Length = 76
Score = 77.8 bits (183), Expect = 9e-16
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 1 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVR 60
MT+ +W+EF KAAE L+ +P R+ KY+H+KG +K+TD+ CLQY T QDV+
Sbjct: 1 MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60
Query: 61 KIDKFMSNLLR 71
K++K S LLR
Sbjct: 61 KLEKLSSTLLR 71
>Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical
protein C36B1.9 protein.
Length = 674
Score = 28.7 bits (61), Expect = 0.52
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 4 VPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN 39
+P +E FE+ + + D +N Y H K FN
Sbjct: 151 IPKYENFERLGTEIPIADLVNLTMGELYEHLKAVFN 186
>AC087081-6|AAG37976.1| 301|Caenorhabditis elegans Hypothetical
protein Y82E9BL.11 protein.
Length = 301
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 11 EKAAEMLYLQDPIN-TRYSVKYSHSKGAFNVK 41
E+A ++L + DP + +RY ++YS+ +G F +K
Sbjct: 252 EEADDILKIFDPDSPSRYEIEYSNDQGKFAIK 283
>AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical
protein K09C6.1 protein.
Length = 661
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 31 YSHSKGAFNVKITDNKKCLQYKTEVQ-QDVRKIDKF 65
+S ++ FN+KITD +C+ K E++ D + D F
Sbjct: 179 FSVNQHPFNIKITDYSRCMTRKPEMKVPDDARPDSF 214
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 2 TFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHS 34
T N + K A +LYL+ PI YS Y+++
Sbjct: 1624 TLSRNPYSWNKFANVLYLESPIGVGYSYAYNNT 1656
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 2 TFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHS 34
T N + K A +LYL+ PI YS Y+++
Sbjct: 1624 TLSRNPYSWNKFANVLYLESPIGVGYSYAYNNT 1656
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 2 TFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHS 34
T N + K A +LYL+ PI YS Y+++
Sbjct: 1624 TLSRNPYSWNKFANVLYLESPIGVGYSYAYNNT 1656
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 12 KAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLLR 71
K + ML INT Y V S + ++KI NK K K+ +F+ + L+
Sbjct: 346 KLSPMLKYSCTINTEYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALK 405
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 12 KAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLLR 71
K + ML INT Y V S + ++KI NK K K+ +F+ + L+
Sbjct: 346 KLSPMLKYSCTINTEYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALK 405
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 4 VPNW-EEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDV 59
V +W + +K A+ + + P R+ VK+ S+ + N+K + Q+ +++QD+
Sbjct: 86 VQHWLDPTKKVAKQVAIGPPFTLRFRVKFFTSEPSSNLK--EELTRYQFFLQIKQDI 140
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 4 VPNW-EEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDV 59
V +W + +K A+ + + P R+ VK+ S+ + N+K + Q+ +++QD+
Sbjct: 102 VQHWLDPTKKVAKQVAIGPPFTLRFRVKFFTSEPSSNLK--EELTRYQFFLQIKQDI 156
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
protein F46H5.4 protein.
Length = 2018
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 39 NVKITDNKKCL-QYKTEVQQDVRKIDKFMSNLLRHMAS 75
N+K DN K + TEV V D+F+ N L +AS
Sbjct: 737 NLKWVDNHKPIFSCSTEVISSVHAQDEFLENFLAGVAS 774
>AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna
(proliferating cell nuclearantigen) homolog protein 1
protein.
Length = 229
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 11 EKAAEMLYLQDPINTRYSVKY 31
E A L ++DP+N +S+KY
Sbjct: 158 ETEAVTLEVKDPVNVNFSIKY 178
>Z49969-4|CAA90268.1| 309|Caenorhabditis elegans Hypothetical
protein W01C9.4 protein.
Length = 309
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 35 KGAFNVKITDNKKCLQYKT 53
KG FNV K+C+Q KT
Sbjct: 137 KGTFNVTTELGKRCIQNKT 155
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 36 GAFNVKITDNKKCLQYK 52
G FN+KITD K L K
Sbjct: 1124 GRFNIKITDGKSILNKK 1140
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 10 FEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTE 54
F A LY I+ ++K S+G+ NV T N KC KT+
Sbjct: 210 FVDAVMTLYATSSIDLP-NIKCVGSEGSLNVPSTHNVKCSIGKTD 253
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 10 FEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTE 54
F A LY I+ ++K S+G+ NV T N KC KT+
Sbjct: 208 FVDAVMTLYATSSIDLP-NIKCVGSEGSLNVPSTHNVKCSIGKTD 251
>AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical
protein Y34B4A.4b protein.
Length = 833
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 26 RYSVKY--SHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNL 69
+ S KY SH K VK+ N + + +T D ID ++ L
Sbjct: 81 KLSTKYPKSHQKPGNEVKVKTNAEFREIETVPNPDEENIDNLLNQL 126
>AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical
protein Y34B4A.4a protein.
Length = 877
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 26 RYSVKY--SHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNL 69
+ S KY SH K VK+ N + + +T D ID ++ L
Sbjct: 81 KLSTKYPKSHQKPGNEVKVKTNAEFREIETVPNPDEENIDNLLNQL 126
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.129 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,572
Number of Sequences: 27539
Number of extensions: 63219
Number of successful extensions: 193
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 19
length of query: 78
length of database: 12,573,161
effective HSP length: 58
effective length of query: 20
effective length of database: 10,975,899
effective search space: 219517980
effective search space used: 219517980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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