GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   1.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   2.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    19   9.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   9.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 8   EEFEKAAEMLYLQDPINTRYSV---KYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKID- 63
           + F++     ++ DP  T+Y++    +S   G   + ++   + L Y      ++  ++ 
Sbjct: 218 DSFQRLTSSTFVYDPRYTKYTINDESFSLQDGILGMALSHKTQNLYYSAMSSHNLNYVNT 277

Query: 64  ------KFMSNLLRHMASND 77
                 KF +N +++  ++D
Sbjct: 278 KQFTQGKFQANDIQYQGASD 297


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 2.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 26  RYSVKYSHSKGAFNVKITDNKKCLQYKTE 54
           R+  +Y   +  F  + TD++   +YK E
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDRYKEE 182


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 39  NVKITDNKKCLQYKTEVQQDVRKID 63
           NV +T N  CL     + +   KID
Sbjct: 158 NVVVTHNGSCLYVPPGIFKSTCKID 182


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 39  NVKITDNKKCLQYKTEVQQDVRKID 63
           NV +T N  CL     + +   KID
Sbjct: 158 NVVVTHNGSCLYVPPGIFKSTCKID 182


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 26  RYSVKYSHSKGAFNVKI 42
           RY ++Y  SKG++   I
Sbjct: 908 RYVIEYKISKGSWETDI 924


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 12 KAAEMLYLQDPINTRYSVKYSHS 34
          K+   +Y     N  Y+ KY HS
Sbjct: 37 KSHSNVYQYRCANCTYATKYCHS 59


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 45   NKKCLQYKTEVQQDVRKI 62
            NK C  ++T+V++   KI
Sbjct: 1684 NKHCTIHRTQVKETDDKI 1701


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.129    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,132
Number of Sequences: 429
Number of extensions: 673
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)