Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001186-TA|BGIBMGA001186-PA|IPR009018|Signal recognition
particle, 9 kDa and 14 kDa protein, IPR008832|Signal recognition
particle 9 kDa
(78 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49100.1 68416.m05363 signal recognition particle 9 kDa prote... 69 4e-13
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 26 3.6
At4g13890.1 68417.m02152 glycine hydroxymethyltransferase, putat... 26 3.6
At3g45010.1 68416.m04849 serine carboxypeptidase III, putative s... 26 3.6
At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo s... 25 4.8
At1g68790.1 68414.m07863 expressed protein 25 4.8
At3g53640.1 68416.m05925 protein kinase family protein contains ... 25 6.4
At1g13350.1 68414.m01550 protein kinase family protein contains ... 25 6.4
At5g27620.1 68418.m03309 cyclin family protein similar to SP|P51... 25 8.4
At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma... 25 8.4
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ... 25 8.4
>At3g49100.1 68416.m05363 signal recognition particle 9 kDa
protein, putative / SRP9, putative similar to SP|P49458
Signal recognition particle 9 kDa protein (SRP9) {Homo
sapiens}; contains Pfam PF05486: Signal recognition
particle 9 kDa protein (SRP9)
Length = 103
Score = 68.9 bits (161), Expect = 4e-13
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 1 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVR 60
M ++ +W+EF + L+ DP +TRY +KY H G +K+TDNK+CL++KT+ Q+ +
Sbjct: 1 MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60
Query: 61 KIDKFMSNLLRHMA 74
K++K + MA
Sbjct: 61 KMEKLNNIFFTLMA 74
>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to
cyclin 3a [Arabidopsis thaliana] GI:509425; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc3b mRNA for cyclin 3b protein GI:728520
Length = 436
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 5 PNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQ 50
P F++ L+D NT + YS + N+K N+KCL+
Sbjct: 45 PTKPSFKQQKRRAVLKDVSNTSADIIYSELRKGGNIKA--NRKCLK 88
>At4g13890.1 68417.m02152 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 470
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 8 EEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQ 57
++FEK E L+ I +Y FN + +NK+ + K +V++
Sbjct: 403 KDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEE 452
>At3g45010.1 68416.m04849 serine carboxypeptidase III, putative
similar to serine carboxypeptidase III from Oryza sativa
SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
vulgare SP|P21529, Triticum aestivum SP|P11515; contains
Pfam profile PF0450 serine carboxypeptidase
Length = 510
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 6 NWEEF--EKAAEMLYLQDPINTRYS 28
+W EF +KA+ ++Y+ P+ T +S
Sbjct: 163 SWNEFGWDKASNLIYVDQPVGTGFS 187
>At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo
sapiens, EMBL:AF007193
Length = 456
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 24 NTRYSVKYSHSKGAFNVKITDNKKCLQ 50
N + S K H KG N TD + CL+
Sbjct: 318 NLKMSNKRDHVKGKLNFDDTDTETCLE 344
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 20 QDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKI 62
Q P TRY ++ + G K +K + + V D+RK+
Sbjct: 934 QTPGQTRYQLRRHRNVGTEEDKAQASKGATEKQERVNDDIRKV 976
>At3g53640.1 68416.m05925 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 642
Score = 25.0 bits (52), Expect = 6.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 6 NWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN--VKITDNKKCLQYKTEV 55
NW++ E L + ++ RY + +H KG F+ V+ D K L EV
Sbjct: 303 NWDDAE-GYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKPELGEPEEV 353
>At1g13350.1 68414.m01550 protein kinase family protein contains
protein kinase domain, Pfam:PF00069 (likely that this
cDNA contains a single unspliced intron. Putative intron
removed in this gene model.)
Length = 761
Score = 25.0 bits (52), Expect = 6.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 6 NWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN--VKITDNKKCLQYKTEV 55
NW++ E L + ++ RY + +H KG F+ V+ D K L EV
Sbjct: 422 NWDDAE-GYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEV 472
>At5g27620.1 68418.m03309 cyclin family protein similar to SP|P51946
Cyclin H (MO15-associated protein) {Homo sapiens};
contains Pfam profile PF00134: Cyclin, N-terminal domain
Length = 336
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 41 KITDNKKCL--QYKTEVQQDVRKIDKFMSNLLRHMASND 77
K+ DN + L YK ++D++ I++ + + L H +S+D
Sbjct: 269 KLLDNIEYLVKNYKCPSEKDMKHINRKLKSCLGHSSSHD 307
>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
PF04578: Protein of unknown function, DUF594
Length = 751
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 11 EKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQD 58
+K +++LY + T+ S + + ++I D+ L Y T+V +
Sbjct: 518 QKNSQILYSLENTTTKSSARRDWASSHTQIQIADHDMLLHYITDVDYE 565
>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 602
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 32 SHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMA 74
SHS+ A + + D K+ + E+ +D+ + +++H +
Sbjct: 273 SHSRCALHKDVWDGKELEEEPDEIYKDILPFKEIAGGIIQHFS 315
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.129 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,970
Number of Sequences: 28952
Number of extensions: 54873
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 11
length of query: 78
length of database: 12,070,560
effective HSP length: 57
effective length of query: 21
effective length of database: 10,420,296
effective search space: 218826216
effective search space used: 218826216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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