Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001185-TA|BGIBMGA001185-PA|IPR011059|Metal-dependent
hydrolase, composite, IPR003764|N-acetylglucosamine-6-phosphate
deacetylase, IPR006680|Amidohydrolase 1
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 30 0.66
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 27 6.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 8.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 8.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 8.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 8.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 8.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 8.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 8.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 8.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 8.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 8.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 8.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 8.1
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 29.9 bits (64), Expect = 0.66
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 167 EVYGSLDNVVIITLAPELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITH 226
E GS+D V I + + F ++D+T V G + L + E+A++ G N++
Sbjct: 342 EEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKA 401
Query: 227 L 227
L
Sbjct: 402 L 402
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 276 NPEGLVLVSDAVPAQGLPDGNHRIGPQIVTV 306
+P G + DA+ A LP+GN+ +G I V
Sbjct: 508 DPPGCQDIDDALHACVLPNGNYEVGVHIADV 538
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 103 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 158
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 159 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 195
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 329 CIVKFKDSIECSLEYALEAASLHPAKALGIDDKKGNL 365
CI++ K ++E Y+L+A + K+ +++KK ++
Sbjct: 3156 CIIQTKQAVEAKKVYSLQAEASLQKKSFLLNEKKNSV 3192
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,088
Number of Sequences: 5004
Number of extensions: 77149
Number of successful extensions: 174
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 15
length of query: 398
length of database: 2,362,478
effective HSP length: 74
effective length of query: 324
effective length of database: 1,992,182
effective search space: 645466968
effective search space used: 645466968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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