GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001185-TA|BGIBMGA001185-PA|IPR011059|Metal-dependent
hydrolase, composite, IPR003764|N-acetylglucosamine-6-phosphate
deacetylase, IPR006680|Amidohydrolase 1
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501...    30   3.7  
01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124     29   6.5  
11_04_0354 + 16697571-16700256,16700335-16700759                       29   8.6  
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409...    29   8.6  
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    29   8.6  
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833     29   8.6  

>12_02_0282 -
           16749358-16749445,16749640-16749695,16749965-16750137,
           16750768-16750924,16751279-16751422,16751959-16752134,
           16753024-16753045,16753845-16753937,16754259-16754431,
           16754550-16754760
          Length = 430

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 342 EYALEAASLHPAKALGIDDKKGNLNFDSDADFVILHP 378
           E  L+ A+++ AKA+  DD+ G+L     AD V+++P
Sbjct: 355 ETVLKMATINGAKAVLWDDEIGSLEVGKKADMVVVNP 391


>01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124
          Length = 508

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 39  VFYVEQLESDITVDCEDLLIAPGFIDIQINGGWGVDFS 76
           ++YVE   + I VD EDL I  G  D+Q +G  GV  S
Sbjct: 287 LYYVEL--AGIRVDGEDLAIPRGTFDLQADGSGGVVLS 322


>11_04_0354 + 16697571-16700256,16700335-16700759
          Length = 1036

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 189 EAIKDLTNLGIKVALGHSIASLAEGEKAVECG-----ANLITHLFNAMLPFHHRDPGLVG 243
           + I   +++GI+  +G+      EG +   CG       +I  LF  M+P H  D    G
Sbjct: 876 QPINSKSSIGIRGTIGYVAPEYGEGGQVSPCGDAYSFGIVILELFTGMVPTH--DMFRDG 933

Query: 244 LLASTMKKQVYYGII 258
           L      K V+ GI+
Sbjct: 934 LTLQKHVKNVFPGIL 948


>08_02_1002 +
           23439642-23440046,23440558-23440761,23440874-23440990,
           23441116-23441511,23441586-23441938,23442067-23442187,
           23442602-23442781,23442813-23442896,23444398-23444523,
           23445286-23445588
          Length = 762

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 78  DSDNIEEGVAKVAKNLLAHGVTAFCPTMITSDQEIYRQILPRIKKTQGNKNGATVLG 134
           DS+NI     KV++ LL   +  F     +SDQ+  R   P +  +  + +GA   G
Sbjct: 392 DSENISTEANKVSEELLTCLLNIFSQMRSSSDQDEDRSSSPSVSGSCESSDGAACAG 448


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 114 RQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESYIKNPHRGIDTIREVYGSLD 173
           R  L    K   NKN ++    HL+G   S +K  A     ++N    ++T+      L 
Sbjct: 144 RNNLRSCNKINSNKNSSSSSRKHLQGRVSSKSKNTAKESGAVEN----LETLYRCDSDLG 199

Query: 174 NVVIITLAPEL--PGCFEAIKDLTNLGIKVALGHSIASLAEGEK 215
           + +  T  PEL   GC + I+      IK    +S  SL E  K
Sbjct: 200 SFMARTKNPELYRNGCTQRIR-----AIKQRSPNSDTSLVENSK 238


>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
          Length = 503

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 126 NKNGATVLGVHLEGPFISPTKKGAHVES 153
           N NG  V G+ +  P +SP   G HVE+
Sbjct: 269 NCNGVRVDGLSISSPALSPNTDGIHVEN 296


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,256
Number of Sequences: 37544
Number of extensions: 508200
Number of successful extensions: 1030
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 6
length of query: 398
length of database: 14,793,348
effective HSP length: 84
effective length of query: 314
effective length of database: 11,639,652
effective search space: 3654850728
effective search space used: 3654850728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)