GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001185-TA|BGIBMGA001185-PA|IPR011059|Metal-dependent
hydrolase, composite, IPR003764|N-acetylglucosamine-6-phosphate
deacetylase, IPR006680|Amidohydrolase 1
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12690| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   4e-07
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 31   1.6  
SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 29   6.6  
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)                 29   6.6  
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)                      29   8.7  

>SB_12690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 53.2 bits (122), Expect = 4e-07
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 339 CSLEYALEAASLHPAKALGIDDKKGNLNFDSDADFVILHPKTLKVQSTWIAG 390
           CS+  A+E A+LHPA+ L I  +KG L+F SDAD + L  + L VQ+T I G
Sbjct: 2   CSMVEAIEGATLHPAQLLNIQHRKGTLDFGSDADLIFLDDQ-LNVQATLIGG 52


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 239 PGLVGLLASTMKKQVYYGI-IADGIHTHPAALRIANRTNPEGLVLVSDAVPAQGLPDGNH 297
           P   GL AS++   +     +   I+  P  LR      P GL  V++A+P  GL   ++
Sbjct: 835 PNGTGLAASSVSSVLTSSTGVPTLINRTPTGLRTVTNAAPTGLQTVTNAIPT-GLRTASN 893

Query: 298 RIGPQIVTVEDG 309
              P + TV +G
Sbjct: 894 NTQPSLRTVTEG 905


>SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 301 PQIVTVEDGCAYVTGTKTLCGSTTALDSCIVKFKDSIECSLEYALEAASLHPAKALGIDD 360
           P +  V+ GC+  TG +    ST A  S ++   +S+  S+     AAS  P+  L    
Sbjct: 176 PSVTVVQTGCSATTGQQASFTSTVAATSSVL---NSLSTSVPQMAYAASTTPS-YLPSKS 231

Query: 361 KKGNLNFDS 369
               LNF+S
Sbjct: 232 TSSGLNFES 240


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 15 ILRDRKIIKEDLWIRDGKI-ENPERVFYVEQLESDIT---VDCEDLLIAPGFIDIQIN 68
          +L DR II   + ++DGKI +  E +  V Q+  + +   +D E+L+I PG +D  ++
Sbjct: 11 VLSDR-IISGYIKVKDGKICQIEETIPDVAQIRDENSCKIIDAEELVIMPGVVDSHVH 67


>SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 303 IVTVEDGCAYVTGTKTLCGSTTALDSCIVKFKDSIECSLEYALEAASLHPAKALGIDDKK 362
           +++  +GC+ +T  K  C   T L   +VK K+   C +    E  +        ++D  
Sbjct: 181 VISEPEGCSAITCRKPNC---TGLSGRVVKLKEKC-CPV---CEGKTHDDDGDDNVNDND 233

Query: 363 GNLNFDSDADFVILHPKTLKV 383
           G +N D D D + L   T+KV
Sbjct: 234 GYINDDDDDDVITLTMVTVKV 254


>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 126 NKNGATVLGVHLEGPFISPTKKGAHVESYIKNPHRGIDTIREVYGSLD 173
           NK+G  VLGV LEG  ++    G  + S + N     D + +V  +++
Sbjct: 62  NKDGLCVLGVFLEGSSVA-VPNGFDLRSVLPNHQAAFDAVAKVEKAME 108


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 140 PFISPTKKGAHVESYIKNPHRGIDTIREVYGSLDNVV 176
           P  SPT K  H   Y+ N  RG++   +   SL N V
Sbjct: 86  PSSSPTSKSNHYNGYLPNYSRGVNMALQEDASLTNKV 122


>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 311 AYVTGTKTLCGSTTALDSCIVKFKDSIECSLEYAL 345
           AYVTG   LC +  A+  C VK  D  + +++ +L
Sbjct: 544 AYVTGVTLLCYAPVAVTFCAVKLTDYDKSAIQVSL 578


>SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)
          Length = 473

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 311 AYVTGTKTLCGSTTALDSCIVKFKDSIECSLEYAL 345
           AYVTG   LC +  A+  C VK  D  + +++ +L
Sbjct: 394 AYVTGVTLLCYAPVAVTFCAVKLTDYDKSAIQVSL 428


>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 140 PFISPTKKGAHVESYIKNPHRGIDTIREVYGSLDNVV 176
           P  SPT K  H   Y+ N  RG++   +   SL N V
Sbjct: 130 PSSSPTSKSNHYNGYLPNYSRGVNMALQEDASLTNKV 166


>SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)
          Length = 301

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 311 AYVTGTKTLCGSTTALDSCIVKFKDSIECSLEYAL 345
           AYVTG   LC +  A+  C +K  D  + +++ +L
Sbjct: 240 AYVTGVTLLCYAPVAVTFCAIKLTDYDKSAIQVSL 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,972
Number of Sequences: 59808
Number of extensions: 567936
Number of successful extensions: 990
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 13
length of query: 398
length of database: 16,821,457
effective HSP length: 84
effective length of query: 314
effective length of database: 11,797,585
effective search space: 3704441690
effective search space used: 3704441690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)