GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001185-TA|BGIBMGA001185-PA|IPR011059|Metal-dependent
hydrolase, composite, IPR003764|N-acetylglucosamine-6-phosphate
deacetylase, IPR006680|Amidohydrolase 1
         (398 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical pr...   378   e-105
AJ745072-1|CAG32978.1|  400|Caenorhabditis elegans alpha1,3-fuco...    31   1.9  
AF003386-15|AAB54261.2|  400|Caenorhabditis elegans Fucosyl tran...    31   1.9  
Z49125-1|CAA88934.1|  424|Caenorhabditis elegans Hypothetical pr...    30   2.5  

>Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical
           protein F59B2.3 protein.
          Length = 418

 Score =  378 bits (929), Expect = e-105
 Identities = 188/400 (47%), Positives = 263/400 (65%), Gaps = 9/400 (2%)

Query: 7   LTRFHNCYILRDRKIIKEDLWIRDGKIENPERVFYVEQLESDITVDCEDLLIAPGFIDIQ 66
           L +F NC +LR   + KE +W+R+G+I +   VF+ E+  +D+ +DCE L+++PGFID+Q
Sbjct: 20  LVQFLNCLVLRSGGLKKEHIWVRNGRILDERTVFFEEKTMADVQIDCEGLILSPGFIDLQ 79

Query: 67  INGGWGVDFSR---DSDNIEEGVAKVAKNLLAHGVTAFCPTMITSDQEIYRQILPRIKKT 123
           +NGG+G+DFS    D    +EG+A VAK LLAHGVT+F PT+ITS  E Y +ILP +K +
Sbjct: 80  LNGGFGIDFSTYNSDDKEYQEGLALVAKQLLAHGVTSFSPTVITSSPETYHKILPLLKPS 139

Query: 124 QGNKNGATVLGVHLEGPFISPTKKGAHVESYIKNP--HRGIDTIREVYGSLDNVVIITLA 181
             +  GA  LG HLEGPFIS  K+G H E  +        ++ I  VYGS +N+ I+T+A
Sbjct: 140 NASSEGAGNLGAHLEGPFISADKRGCHPEQLVITSLSPNPVEIIEHVYGSTENIAIVTMA 199

Query: 182 PELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITHLFNAMLPFHHRDPGL 241
           PEL G  EAI+   + G  V++GHS A L  GE AV  GA +ITHLFNAM  +HHRDPGL
Sbjct: 200 PELEGAQEAIEYFVSTGTTVSVGHSSAKLGPGEMAVLSGAKMITHLFNAMQSYHHRDPGL 259

Query: 242 VGLLAS---TMKKQVYYGIIADGIHTHPAALRIANRTNPEGLVLVSDAVPAQGLPDGNHR 298
           +GLL S   T    +YYGII+DGIHTH +ALRIA  TN  GLVLV+DA+ A G+ DG H+
Sbjct: 260 IGLLTSSKLTPDHPLYYGIISDGIHTHDSALRIAYHTNSAGLVLVTDAIAALGMSDGVHK 319

Query: 299 IGPQIVTVEDGCAYVTGTKTLCGSTTALDSCIVKFKDSIECSLEYALEAASLHPAKALGI 358
           +G Q + V+   A + GT T  GS  ++  CI     +  C +E+AL++A+  PA  LG+
Sbjct: 320 LGTQTIHVKGLEAKLDGTNTTAGSVASMPYCIRHLMKATGCPIEFALQSATHKPATLLGV 379

Query: 359 DDKKGNLNFDSDADFVILHPKTLKVQSTWIAGECVYKCQN 398
            D+KG L+    ADFV++  K + V++T+ +G+ V+  Q+
Sbjct: 380 SDEKGTLDVGRLADFVLI-DKNVTVKATFCSGKRVFLAQD 418


>AJ745072-1|CAG32978.1|  400|Caenorhabditis elegans
           alpha1,3-fucosyltransferase homologueprotein.
          Length = 400

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 135 VHLEGPFISPTK----KGAHVESYIKNPHRGIDTIREVYGSLDN 174
           +H  G F+ PT+    +G  V+SY   P R + T++ ++G + N
Sbjct: 164 IHKYGTFLIPTQIAESRGFKVQSYYVQPKRLVKTMKGIFGLISN 207


>AF003386-15|AAB54261.2|  400|Caenorhabditis elegans Fucosyl
           transferase protein 3 protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 135 VHLEGPFISPTK----KGAHVESYIKNPHRGIDTIREVYGSLDN 174
           +H  G F+ PT+    +G  V+SY   P R + T++ ++G + N
Sbjct: 164 IHKYGTFLIPTQIAESRGFKVQSYYVQPKRLVKTMKGIFGLISN 207


>Z49125-1|CAA88934.1|  424|Caenorhabditis elegans Hypothetical
           protein C47G2.1 protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 212 EGEKAVECGANLITHLFNAMLPF 234
           EGE  VECG N IT  FN   PF
Sbjct: 26  EGEPEVECGPNSITVNFNTRNPF 48


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,367
Number of Sequences: 27539
Number of extensions: 431157
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 4
length of query: 398
length of database: 12,573,161
effective HSP length: 83
effective length of query: 315
effective length of database: 10,287,424
effective search space: 3240538560
effective search space used: 3240538560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)