GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001185-TA|BGIBMGA001185-PA|IPR011059|Metal-dependent
hydrolase, composite, IPR003764|N-acetylglucosamine-6-phosphate
deacetylase, IPR006680|Amidohydrolase 1
         (398 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   6.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   6.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   8.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 358 IDDKKGNLNFDSDADFVILHPKTLKVQSTW 387
           +D K G +N    A ++ LH K  KV+S +
Sbjct: 498 LDSKTGGVNLKGHAHWLTLHFKDPKVESAF 527


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 178 ITLAPELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITHL 227
           + LA  +  C E+   +    + + L   I SLA   K +E     +TH+
Sbjct: 69  VVLAKTIAECPESENTVQKAALVLRLREGIGSLARILKTIENFKGTVTHV 118


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 48  DITVDCEDLLIAPGFIDIQINGGWGVDFSRDSDNIEEGVAKVAKNLLAHG 97
           + T+ C+D  +AP   D+     + V    D D++E       KN++A G
Sbjct: 165 ETTIGCKDKNMAPILKDLMETSYFKVVVVEDVDSVE--CCGALKNIVACG 212


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 174 NVVIITLAPELPGCFEAIKDLTNLG 198
           +  I+ L P  P C EA ++   LG
Sbjct: 398 DAAIVMLVPSKPMCAEAFQEFPPLG 422


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 119 RIKKTQGNKNGATVLGVHLEGPFISPTK 146
           RI+ T+  KNG  VLG  +E   +SP +
Sbjct: 333 RIQLTE--KNGIDVLGNIMEASILSPNQ 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,116
Number of Sequences: 429
Number of extensions: 4771
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 398
length of database: 140,377
effective HSP length: 59
effective length of query: 339
effective length of database: 115,066
effective search space: 39007374
effective search space used: 39007374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)