GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001185-TA|BGIBMGA001185-PA|IPR011059|Metal-dependent
hydrolase, composite, IPR003764|N-acetylglucosamine-6-phosphate
deacetylase, IPR006680|Amidohydrolase 1
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi...    31   1.0  
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste...    29   5.4  
At4g14280.1 68417.m02201 hypothetical protein                          29   5.4  
At3g16060.1 68416.m02030 kinesin motor family protein similar to...    29   5.4  
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro...    28   9.5  

>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 834

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 10  FHNCYILRDRKIIKEDLWIRDGKIENPERVFYVEQLESD 48
           + NCY L+D +++ +++ ++D  I N     YV+Q E++
Sbjct: 499 YSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE 537


>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
           male-sterility protein, putative similar to acyl CoA
           reductase [Simmondsia chinensis] GI:5020215; contains
           Pfam profile PF03015: Male sterility protein; identical
           to cDNA male sterility 2-like protein GI:1491614
          Length = 491

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 175 VVIITLAPELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVE-CGANLITHLFNAMLP 233
           ++  T+A   PG  E +K L ++ +    G     LA+     +   A+++ +   A   
Sbjct: 262 MITSTIAEPFPGWIEGLKTLDSVIVAYGKGRLKCFLADSNSVFDLIPADMVVNAMVAAAT 321

Query: 234 FHHRDPGLVGL--LASTMKKQVYYGIIAD 260
            H  D G+  +  + S+ K  V +G + D
Sbjct: 322 AHSGDTGIQAIYHVGSSCKNPVTFGQLHD 350


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 146 KKGAHVESYIKNPHRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLTNLGIKVALGH 205
           K GA + +++       + I    G L  ++ I L  E+P      KD +  G++V+ G 
Sbjct: 539 KLGAEILTFLAFEEGATEKIGGTGGVLKGLLCIFLNNEIP------KDKS--GVRVSAGE 590

Query: 206 SIASLAEGEKA 216
           S+A LA+G K+
Sbjct: 591 SVAMLAQGSKS 601


>At3g16060.1 68416.m02030 kinesin motor family protein similar to
           kinesin heavy chain member 2 GB:NP_032468 from [Mus
           musculus]; contains Pfam profile PF00225: Kinesin motor
           domain
          Length = 684

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 120 IKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESYIKNPHRGIDTIREVYGSLDNVVIIT 179
           + K +  KN   ++  H     +  TK    + +Y++      D + +   S D V   T
Sbjct: 179 LNKKESTKNEEDIVDTHANCLTVHETKLKVDLTAYVEKHEFVFDAVLDEEVSNDEVYRET 238

Query: 180 LAPELPGCFEAIK 192
           + P +P  F+ IK
Sbjct: 239 VEPVVPLIFQRIK 251


>At3g32400.1 68416.m04142 formin homology 2 domain-containing
           protein / FH2 domain-containing protein common family
           members: At2g43800, At3g25500, At5g48360, At4g15200,
           At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
           thaliana];
          Length = 488

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 174 NVVIITLAPELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITHLFNA 230
           N+ I  LA +LPG     KD+ +L  + A    +  LAE  +A   G   +   F A
Sbjct: 329 NIFIFVLAEKLPGLLNFPKDMVSL--EAATNIQLKYLAEEMQATSKGLEKVVQEFTA 383


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,709,021
Number of Sequences: 28952
Number of extensions: 415301
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 5
length of query: 398
length of database: 12,070,560
effective HSP length: 83
effective length of query: 315
effective length of database: 9,667,544
effective search space: 3045276360
effective search space used: 3045276360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)