GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001184-TA|BGIBMGA001184-PA|undefined
         (60 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7HMR7 Cluster: Transposase IS116/IS110/IS902 family pr...    32   1.9  
UniRef50_UPI00006CB167 Cluster: hypothetical protein TTHERM_0029...    31   3.4  
UniRef50_Q2QNJ3 Cluster: Phospholipase/Carboxylesterase family p...    31   5.9  
UniRef50_A7EPX3 Cluster: Putative uncharacterized protein; n=2; ...    31   5.9  
UniRef50_UPI00006CAE5F Cluster: MutS domain V family protein; n=...    30   7.9  
UniRef50_A0CR04 Cluster: Chromosome undetermined scaffold_249, w...    30   7.9  

>UniRef50_A7HMR7 Cluster: Transposase IS116/IS110/IS902 family
           protein; n=1; Fervidobacterium nodosum Rt17-B1|Rep:
           Transposase IS116/IS110/IS902 family protein -
           Fervidobacterium nodosum Rt17-B1
          Length = 382

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 4   KIDYDFQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIKT-AKEA 60
           K+D+   K +  L K  T+E +  + +  L EY A+I     S + LA +++T AK+A
Sbjct: 154 KLDFKLNKTFECLLKDYTIEEIANMPIEELFEYIAKISRHNVSSQVLAEKLQTLAKDA 211


>UniRef50_UPI00006CB167 Cluster: hypothetical protein
           TTHERM_00298480; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00298480 - Tetrahymena
           thermophila SB210
          Length = 619

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 13  YSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIK 55
           YST  + I M    ++  TC+S +   +IN +  PKKLA + K
Sbjct: 85  YSTTFEVILMSCQLEVLQTCVSAFMMGLINHKQIPKKLAKKCK 127


>UniRef50_Q2QNJ3 Cluster: Phospholipase/Carboxylesterase family
           protein, expressed; n=4; Oryza sativa|Rep:
           Phospholipase/Carboxylesterase family protein, expressed
           - Oryza sativa subsp. japonica (Rice)
          Length = 625

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 10  QKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIK 55
           Q   ST+ ++   E+L+K+K+ CL  +     N +G    LA ++K
Sbjct: 373 QSATSTIPRSNGSEQLKKLKILCLHGFRQNASNFKGRTSALAKKLK 418


>UniRef50_A7EPX3 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Sclerotinia sclerotiorum 1980
          Length = 860

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 7   YDFQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIKTAKE 59
           Y  QK+Y++L K IT E L      C+ EY   +  LRG   +    ++  KE
Sbjct: 459 YAVQKLYTSLKKDITQEGLTLAGAWCIGEYGETL--LRGGQYEEEELVQEVKE 509


>UniRef50_UPI00006CAE5F Cluster: MutS domain V family protein; n=1;
           Tetrahymena thermophila SB210|Rep: MutS domain V family
           protein - Tetrahymena thermophila SB210
          Length = 1081

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 8   DFQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRG 45
           +FQ I+  +     ME+  KI +T ++ + +Q++NL G
Sbjct: 457 EFQFIHQDIQNVNLMEQYNKIPITLMASHLSQLVNLCG 494


>UniRef50_A0CR04 Cluster: Chromosome undetermined scaffold_249,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_249,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1208

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 9   FQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQI 54
           F+++Y  LN++IT+E+L++I+  C    +   +  R S    A +I
Sbjct: 779 FRELYKRLNESITLEQLEEIEHECFQLGFDMDVEQRRSQLVQAQEI 824


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.130    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,735,110
Number of Sequences: 1657284
Number of extensions: 1299945
Number of successful extensions: 4030
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4025
Number of HSP's gapped (non-prelim): 6
length of query: 60
length of database: 575,637,011
effective HSP length: 40
effective length of query: 20
effective length of database: 509,345,651
effective search space: 10186913020
effective search space used: 10186913020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)