GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001184-TA|BGIBMGA001184-PA|undefined
         (60 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   0.52 
SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce...    24   2.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    23   3.6  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    23   4.8  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    22   8.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    22   8.4  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    22   8.4  

>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 0.52
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 8   DFQKIYSTLNKAITMERLQKIKLTCLSEY 36
           D Q+I S ++  IT+E L KI  T L+++
Sbjct: 419 DLQQIRSLVSSLITVEELPKILTTILNKF 447


>SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 8   DFQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPK 48
           DFQK+Y +  ++ T      +K+  L +    ++ L   P+
Sbjct: 60  DFQKLYESALQSATESIPDSVKMDLLKDIKTCVLKLANPPE 100


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 17  NKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIKTAKE 59
           NK I+ E    I    ++E   Q  +L+   +KL  QIK   E
Sbjct: 301 NKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLE 343


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 27  KIKLTCLSEYYAQIINLRG 45
           K+K+  +SE++A  +NL G
Sbjct: 487 KVKMATVSEFHANALNLFG 505


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 10  QKIYSTLNKAITMERLQKIKLTCLSEYYAQIIN-LRGSPKKLASQIKTAKE 59
           Q+++ + N+A   E+L K  +    EY+    N ++ S  K    + T++E
Sbjct: 65  QQLFDSENQATAPEKLPKDVIIPEEEYHTDTFNVVKESNDKPKENLVTSEE 115


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 9   FQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIKTAKEA 60
           +  I S + + + + RLQ+++   L E     +  +   K L  +I   KEA
Sbjct: 570 YNAITSAVKRDVFINRLQRLRRMNLYEITFLSMKQKMQLKSLREEIDNTKEA 621


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 36  YYAQIINLRGSPKKLASQIKTAKE 59
           Y+A ++N + S  K  S+++  KE
Sbjct: 174 YWASVLNTKASFSKKKSRVQMVKE 197


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.130    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,566
Number of Sequences: 5004
Number of extensions: 6109
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 2,362,478
effective HSP length: 41
effective length of query: 19
effective length of database: 2,157,314
effective search space: 40988966
effective search space used: 40988966
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)