GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001184-TA|BGIBMGA001184-PA|undefined
         (60 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369...    31   0.16 
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454     26   3.3  
09_02_0555 - 10588685-10592038                                         26   3.3  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    26   4.4  
03_02_1029 - 13488535-13493037                                         26   4.4  
08_02_1068 - 24076662-24077231                                         25   7.7  

>12_02_0785 +
           23135764-23135973,23136061-23136713,23136822-23136903,
           23137031-23137113,23137229-23137361,23137493-23137664,
           23137929-23138656
          Length = 686

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 10  QKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIK 55
           Q   ST+ ++   E+L+K+K+ CL  +     N +G    LA ++K
Sbjct: 434 QSATSTIPRSNGSEQLKKLKILCLHGFRQNASNFKGRTSALAKKLK 479


>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
          Length = 674

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 9   FQKIYSTLNKAITMERLQKIKLTC----LSE-YYAQIINLRGSPKKLAS 52
           +  I+  +++   + R   +K T     L+E Y+A+I++L G PKK+ S
Sbjct: 355 YDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVS 403


>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 9   FQKIYSTLNKAITMERLQKIKLTC----LSE-YYAQIINLRGSPKKLAS 52
           +  I+  +++   + R   +K T     L+E Y+A+I++L G PKK+ S
Sbjct: 774 YDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVS 822


>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 36  YYAQIINLRGSPKKLAS 52
           Y+A+I++L G PKK+ S
Sbjct: 856 YFARIVSLHGVPKKIVS 872


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 36   YYAQIINLRGSPKKLAS 52
            Y+A+I++L G PKK+ S
Sbjct: 1189 YFARIVSLHGVPKKIVS 1205


>08_02_1068 - 24076662-24077231
          Length = 189

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 33  LSEYYAQIINLRGSPKKLASQIKTA 57
           LSE +AQ+ +LRG+ ++L  ++  A
Sbjct: 104 LSELWAQVEHLRGANRRLLDELNRA 128


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.130    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,295
Number of Sequences: 37544
Number of extensions: 27796
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 6
length of query: 60
length of database: 14,793,348
effective HSP length: 40
effective length of query: 20
effective length of database: 13,291,588
effective search space: 265831760
effective search space used: 265831760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)