GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001184-TA|BGIBMGA001184-PA|undefined
         (60 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.18 
SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.72 
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   1.3  
SB_185| Best HMM Match : PAN (HMM E-Value=0.00062)                     27   2.9  
SB_28424| Best HMM Match : SAM_1 (HMM E-Value=8e-06)                   26   3.8  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      26   3.8  
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)                   26   5.1  

>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 12  IYSTLNKAITMERLQKIKLTCLSEYYAQIINLRG---------SPKKLASQIKTAKEA 60
           +  T +   T+ RL K+K+TC +    Q++++ G         + KK+A ++K  KEA
Sbjct: 326 LVKTRSMEATLSRLNKLKVTCSNTKALQVLDVLGEDHDHVCVETQKKIAHEVKATKEA 383


>SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 9/49 (18%)

Query: 21  TMERLQKIKLTCLSEYYAQIINLRG---------SPKKLASQIKTAKEA 60
           T+ RL K+K+TC +    Q++++ G         + KK+A  +K  KEA
Sbjct: 69  TLSRLNKLKVTCSNTKALQVLDILGEDHDHVCVETQKKIAHGVKATKEA 117


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 22  MERLQKIKLTCLSEYYAQIINLRGS 46
           MER+ +I  TCL+  + +I+N+R S
Sbjct: 669 MERVSRISYTCLNVQFKKIMNVRRS 693


>SB_185| Best HMM Match : PAN (HMM E-Value=0.00062)
          Length = 183

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 9   FQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKL 50
           F KIY  L +  T    ++IK TCL  Y   +  +RG  ++L
Sbjct: 108 FSKIYEGLPED-TRRLPRRIKQTCLMTYEGLLKEIRGPTRRL 148


>SB_28424| Best HMM Match : SAM_1 (HMM E-Value=8e-06)
          Length = 214

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 29 KLTCLSEYYAQIINLRGSPKKLASQIKT 56
          KL CL +     I +RG  +KLA +IKT
Sbjct: 50 KLACLQDLDLIGIEIRGHKQKLARRIKT 77


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 13   YSTLNKAITMERLQKIKLTCLSE 35
            +S L+ A+  E LQKI ++C SE
Sbjct: 1232 WSPLDDAVVNETLQKIVMSCFSE 1254


>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
          Length = 1043

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 22  MERLQKIKLTCLSEYYAQIINLR 44
           MER+ +I  TCL+  + +I+N R
Sbjct: 886 MERVSRISYTCLNVQFNKIMNAR 908


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.130    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,785
Number of Sequences: 59808
Number of extensions: 39685
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 16,821,457
effective HSP length: 39
effective length of query: 21
effective length of database: 14,488,945
effective search space: 304267845
effective search space used: 304267845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)