GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001184-TA|BGIBMGA001184-PA|undefined
         (60 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical pr...    26   2.7  
Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical pr...    26   2.7  
AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear recep...    25   8.3  
AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormo...    25   8.3  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    25   8.3  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    25   8.3  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    25   8.3  

>Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 1   MTIKIDYDFQKIYSTLNKAITMERLQKIKLTCLSEYYA 38
           + IK+   F  ++S L+K IT  R +K+K+ C  + +A
Sbjct: 194 LMIKLLLSFWHVFSRLDKLITTARARKLKV-CSQQTWA 230


>Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 1   MTIKIDYDFQKIYSTLNKAITMERLQKIKLTCLSEYYA 38
           + IK+   F  ++S L+K IT  R +K+K+ C  + +A
Sbjct: 194 LMIKLLLSFWHVFSRLDKLITTARARKLKV-CSQQTWA 230


>AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear receptor
           NHR-90 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 3   IKIDYDFQKIYSTLNKAITMERLQKIKLTCLSEYYA 38
           IK+   F  +++ L+K IT  + +K+KL C  + +A
Sbjct: 218 IKLLLSFWHVFARLDKLITTAKARKLKL-CSQQTWA 252


>AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 90 protein.
          Length = 393

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 3   IKIDYDFQKIYSTLNKAITMERLQKIKLTCLSEYYA 38
           IK+   F  +++ L+K IT  + +K+KL C  + +A
Sbjct: 203 IKLLLSFWHVFARLDKLITTAKARKLKL-CSQQTWA 237


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 9   FQKIYSTLNKAIT-MERLQKIKLTCLSEYYAQIINLRGSPKKLASQIKTA 57
           F  +Y++L+K+ T     Q +K + +  Y AQ+   + +P    SQ+ TA
Sbjct: 695 FGLLYASLSKSETDFSADQLVKFSAMFIYAAQVNFDKSTPSTSKSQLHTA 744


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 9   FQKIYSTLNKAIT-MERLQKIKLTCLSEYYAQIINLRGSPKKLASQIKTA 57
           F  +Y++L+K+ T     Q +K + +  Y AQ+   + +P    SQ+ TA
Sbjct: 852 FGLLYASLSKSETDFSADQLVKFSAMFIYAAQVNFDKSTPSTSKSQLHTA 901


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 21  TMERLQKIKLTCLSEYYAQIINLRGSPKKLASQIK 55
           T+E+LQ++    L +YY   +N     K++A  +K
Sbjct: 361 TVEKLQEVLSNNLHDYYVNQMNQPKYSKRIARMMK 395


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.130    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,003
Number of Sequences: 27539
Number of extensions: 30945
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 12,573,161
effective HSP length: 41
effective length of query: 19
effective length of database: 11,444,062
effective search space: 217437178
effective search space used: 217437178
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)