GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001184-TA|BGIBMGA001184-PA|undefined
         (60 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family...    27   2.1  
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family...    27   2.1  
At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical...    26   2.7  
At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical...    26   2.7  
At1g19480.1 68414.m02426 HhH-GPD base excision DNA repair family...    26   3.6  
At3g17220.1 68416.m02199 invertase/pectin methylesterase inhibit...    25   4.8  
At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical...    25   6.3  

>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 394

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 17  NKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQI 54
           ++ +T+ R+Q   LTC  E  A + +LR     LAS I
Sbjct: 116 SRTVTVPRIQARSLTCEGELEAALHHLRSVDPLLASLI 153


>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 391

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 17  NKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQI 54
           ++ +T+ R+Q   LTC  E  A + +LR     LAS I
Sbjct: 116 SRTVTVPRIQARSLTCEGELEAALHHLRSVDPLLASLI 153


>At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 612

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/36 (30%), Positives = 24/36 (66%)

Query: 10  QKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRG 45
           + + +T+ KA+   ++++ KL+ L+ +YAQI   +G
Sbjct: 536 ETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQG 571


>At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 595

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/36 (30%), Positives = 24/36 (66%)

Query: 10  QKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRG 45
           + + +T+ KA+   ++++ KL+ L+ +YAQI   +G
Sbjct: 519 ETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQG 554


>At1g19480.1 68414.m02426 HhH-GPD base excision DNA repair family
           protein contains Pfam PF00730: HhH-GPD superfamily base
           excision DNA repair; similar to DNA-3-methyladenine
           glycosylase 1 (3-methyladenine DNA glycosidase 1) (3MEA
           DNA glycosylase 1) (SP:Q92383) {Schizosaccharomyces
           pombe}
          Length = 382

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 18  KAITMERLQKIKLTCLSEYYAQIINLRGSPKKLASQI 54
           +AIT+ R+Q   LTC  E    I  LR +   LA+ I
Sbjct: 121 RAITVPRIQARPLTCEGELETAIHYLRNADPLLAALI 157


>At3g17220.1 68416.m02199 invertase/pectin methylesterase inhibitor
           family protein similar to SP|P83326 Pectinesterase
           inhibitor (Pectin methylesterase inhibitor) (PMEI)
           {Actinidia chinensis}; contains Pfam profile PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 173

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 9   FQKIYSTLNKAITMERLQKIKLTCLSEYYAQIINLRGSPKKLAS 52
           F+KI S L K  T   ++K   +C+  Y + I +L  + + LAS
Sbjct: 77  FRKIQS-LVKTATNPTMKKAYTSCVQHYKSAISSLNDAKQSLAS 119


>At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 596

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 10  QKIYSTLNKAITMERLQKIKLTCLSEYYAQI 40
           + + +T+ KA+   ++++ KL+ L+ +YAQI
Sbjct: 519 ETLVNTIPKAVVHCQVRQAKLSLLNYFYAQI 549


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.130    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,088
Number of Sequences: 28952
Number of extensions: 27088
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 12,070,560
effective HSP length: 40
effective length of query: 20
effective length of database: 10,912,480
effective search space: 218249600
effective search space used: 218249600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)