GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001181-TA|BGIBMGA001181-PA|undefined
         (77 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    20   3.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    19   7.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      19   7.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      19   7.8  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    19   7.8  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 16  VVNAVTAKEKR 26
           +VNAV  KEKR
Sbjct: 94  IVNAVFVKEKR 104


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 36  DDQLDVRDATPASSQHEF 53
           DD  ++    P + QH F
Sbjct: 221 DDDSNIPQNNPKNKQHNF 238


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 20  VTAKEKRRCYFCTVTGDD 37
           + A+ +R CY     G D
Sbjct: 608 LAARSRRCCYHAVAPGTD 625


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 20  VTAKEKRRCYFCTVTGDD 37
           + A+ +R CY     G D
Sbjct: 500 LAARSRRCCYHAVAPGTD 517


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 36 DDQLDVRDATPASSQHEFL 54
          DD  D R++   SS H  L
Sbjct: 46 DDDTDGRESLSPSSAHTVL 64


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544
Number of Sequences: 317
Number of extensions: 538
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 77
length of database: 114,650
effective HSP length: 46
effective length of query: 31
effective length of database: 100,068
effective search space:  3102108
effective search space used:  3102108
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)