GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001181-TA|BGIBMGA001181-PA|undefined
         (77 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   0.91 
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   1.6  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    23   6.4  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    22   8.5  

>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 3   NAGQSAAKLFT-TKVVNAVTAKEKRRCYFCTVTGDDQLDVRDATP 46
           ++G S  ++F  + VVNAV+ ++ R     T + D+ ++    TP
Sbjct: 134 DSGNSVGEIFGHSSVVNAVSLRKSRPFRAATASDDNSINFFHGTP 178


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 59  NGPIYVVDCIIRMGKELVK 77
           N P YV  C++  GK+++K
Sbjct: 109 NSPSYVQPCVVDAGKKILK 127


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 32  TVTGDDQLDVRDATPASSQHEFLFFGRNGPI 62
           T +G D +++   TP SS H      +N P+
Sbjct: 146 TDSGIDDIELTQRTPPSSSHTSSSILQNTPV 176


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 13  TTKVVNAVTAKEKRRCYFCTVTG 35
           TT   NA+  ++  RC F T  G
Sbjct: 78  TTVATNALLERKGERCAFITTKG 100


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,643
Number of Sequences: 5004
Number of extensions: 10156
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 2,362,478
effective HSP length: 57
effective length of query: 20
effective length of database: 2,077,250
effective search space: 41545000
effective search space used: 41545000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)