Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001181-TA|BGIBMGA001181-PA|undefined
(77 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 30 0.21
07_03_0059 + 12901191-12901316,12901333-12901452,12901891-129021... 27 1.5
04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791... 27 1.5
08_02_0208 - 14318485-14319283,14319704-14320170 27 1.9
03_06_0055 + 31317515-31317724,31317829-31318029,31318178-313183... 26 4.4
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 25 5.9
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 25 7.7
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476 25 7.7
02_04_0101 - 19734620-19734672,19735391-19735486,19735765-197358... 25 7.7
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 30.3 bits (65), Expect = 0.21
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 17 VNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFGRNGPIYVVDCI 68
VNA K+ FC++T + + R A ASS+ E +F G +Y +D +
Sbjct: 790 VNAQLPKKTEHVLFCSLTTEQRATYR-AFLASSEVEQIFDGNRNSLYGIDVL 840
>07_03_0059 +
12901191-12901316,12901333-12901452,12901891-12902170,
12902348-12902895,12902943-12903122,12904331-12904846
Length = 589
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 13 TTKVVNAVTAKE--KRRCYFCTVTGDDQLDVRDAT 45
T +V+ +TA++ +RRC + T TG ++VR T
Sbjct: 40 TCEVILGMTARKPVRRRCTWATTTGTVHMEVRGGT 74
>04_04_0634 -
26777889-26778452,26778526-26778797,26778905-26779117,
26779497-26779578
Length = 376
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 57 GRNGPIYVVDCIIRMGKELV 76
GR+ PIYV +C++ M K LV
Sbjct: 140 GRDKPIYVKNCLVGMRKTLV 159
>08_02_0208 - 14318485-14319283,14319704-14320170
Length = 421
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 16 VVNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFGRNGPIYVVD 66
V++ + ++KR + V D V D S QH + RNG IYV+D
Sbjct: 113 VIDRINLEKKRHIFGRQVPACDF--VLDHQSVSRQHAAVVPHRNGSIYVID 161
>03_06_0055 +
31317515-31317724,31317829-31318029,31318178-31318343,
31319417-31319814
Length = 324
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 26 RRCYFCTVTGDDQLDVRDATPASSQHEFLFFGRNGPIYVVDCII 69
RR Y+ +V D + VRDA Q + G ++ DC +
Sbjct: 26 RRDYYASVCPDVETIVRDAVTKKVQETSVAVGATVRLFFHDCFV 69
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 12 FTTKVVNAVTAKEKR--RCYFCTVTGDDQLDVRDATPASSQHEFLF 55
FT +VV + K R C + GD++L + + P S FLF
Sbjct: 625 FTNEVVLIAKLQHKNLVRLLGCCIHGDEKLLIYEYLPNKSLDHFLF 670
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 3 NAGQSAAKLFTTKVVNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFGRNGPI 62
+ G+ +AK + AV A + C G ++D+ A S+Q + L G + PI
Sbjct: 1193 STGKLSAKTVGNSTMRAV-AFSNEGTFICEAFGRVEVDIPVAMILSTQSDRLCVGCSMPI 1251
Query: 63 Y 63
Y
Sbjct: 1252 Y 1252
>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
Length = 370
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 57 GRNGPIYVVDCIIRMGKELV 76
GR+ PIY C++ M K LV
Sbjct: 95 GRDKPIYARSCLVGMRKTLV 114
>02_04_0101 -
19734620-19734672,19735391-19735486,19735765-19735851,
19736058-19736107,19736451-19736461
Length = 98
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 17 VNAVTAKEKRRCYFCTVTGD 36
+ V +EK+RC +C TGD
Sbjct: 64 IRNVRQQEKKRCTYCHGTGD 83
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,508
Number of Sequences: 37544
Number of extensions: 70888
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)
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