GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001181-TA|BGIBMGA001181-PA|undefined
         (77 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)                    25   8.6  
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.6  

>SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)
          Length = 283

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 35  GDDQL-DVRDATPASSQHEFLFFGRNGPIYVVDC 67
           GD ++ DV  + P  S   F F    GP++ V+C
Sbjct: 115 GDMEMGDVTSSVPLGSPVTFAFAPHVGPVFSVNC 148


>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   SAAKLFTTKVVNAVTAKEKRRCYFCTVTGD-DQLDVRDATPASSQHEF 53
           S  K F   V N V   E+ R  FC  +GD   LD ++  P  +  E+
Sbjct: 158 SVQKAFKKDVKNLVDVLEELRNPFCEDSGDLLVLDTKEIMPCKTFKEY 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,382
Number of Sequences: 59808
Number of extensions: 81955
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 2
length of query: 77
length of database: 16,821,457
effective HSP length: 55
effective length of query: 22
effective length of database: 13,532,017
effective search space: 297704374
effective search space used: 297704374
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)