GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001181-TA|BGIBMGA001181-PA|undefined
         (77 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              25   0.29 
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     21   4.8  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    20   8.4  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    20   8.4  

>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 21  TAKEKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFGRNG 60
           T KE  RCY C   G +  D R  +P   Q+  +  G+ G
Sbjct: 544 TPKEHLRCYRCLEHGHNARDCR--SPVDRQNVCIRCGQEG 581


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 10  KLFTTKVVNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHE 52
           K+   +V+ A +  +   C+FC   G  + D ++     S  E
Sbjct: 58  KVQEERVLKAKSESKPGACFFCGQPGHKKRDCKEFLNRESSGE 100


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 21  TAKEKRRCYFCTVTGDDQLDVR 42
           T +E+ RCY C   G    D R
Sbjct: 655 TPRERVRCYRCLELGHWAHDCR 676


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 22  AKEKRRCYFCTVTG 35
           A E++RCY C   G
Sbjct: 471 APERQRCYRCLERG 484


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,079
Number of Sequences: 2123
Number of extensions: 2502
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 516,269
effective HSP length: 52
effective length of query: 25
effective length of database: 405,873
effective search space: 10146825
effective search space used: 10146825
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)