GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001181-TA|BGIBMGA001181-PA|undefined
         (77 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome re...    27   2.1  
AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome re...    27   2.1  
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p...    25   4.8  
Z48583-1|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AF026211-5|AAB71289.1|  288|Caenorhabditis elegans Hypothetical ...    25   4.8  
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    25   8.4  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform b
           protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 49  SQHEFLFFGRNGPIYVVDCIIRMGKELVK 77
           S+ +F+    NGP YVV C   + KE +K
Sbjct: 74  SEEKFIVKATNGPRYVVGCRRSINKEELK 102


>AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform a
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 49  SQHEFLFFGRNGPIYVVDCIIRMGKELVK 77
           S+ +F+    NGP YVV C   + KE +K
Sbjct: 82  SEEKFIVKATNGPRYVVGCRRSINKEELK 110


>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
            protein Y41E3.9 protein.
          Length = 1440

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 11   LFTTKVVNAVTAKEKRR-CYFCTVTGDDQLDVRD 43
            + T KVV  V   +KR+ C F   + DD L+  D
Sbjct: 1202 ILTNKVVQLVPEDDKRKSCVFSQQSDDDLLEKED 1235


>Z48583-1|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
           protein F54B3.1 protein.
          Length = 3396

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 17  VNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFGR---NGPIYVV 65
           +NAV    K R  FC V     + +  AT  S +  + F  +   NGP+ ++
Sbjct: 622 LNAVLYSIKVRATFCLVENQTYVTLVYATQNSKKPSYFFIRKVICNGPVAII 673


>AF026211-5|AAB71289.1|  288|Caenorhabditis elegans Hypothetical
           protein T13B5.5 protein.
          Length = 288

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 39  LDVRDATPASSQHEFLFFGRNGPI 62
           + VRD + ++S  +F+F G+NG I
Sbjct: 178 VSVRDHSSSNSNSKFIFSGQNGGI 201


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 1   MENAGQSAAKLFTTKVVNAVTAKEKRRCYFC 31
           +E+A +S+A   T + + + T +EK  C FC
Sbjct: 154 IESADRSSASTSTPRTLVSGTPREKIPCGFC 184


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 1   MENAGQSAAKLFTTKVVNAVTAKEKRRCYFC 31
           +E+A +S+A   T + + + T +EK  C FC
Sbjct: 154 IESADRSSASTSTPRTLVSGTPREKIPCGFC 184


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,369
Number of Sequences: 27539
Number of extensions: 60576
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 7
length of query: 77
length of database: 12,573,161
effective HSP length: 57
effective length of query: 20
effective length of database: 11,003,438
effective search space: 220068760
effective search space used: 220068760
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)