GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001180-TA|BGIBMGA001180-PA|IPR001356|Homeobox,
IPR000047|Helix-turn-helix motif, lambda-like repressor,
IPR009057|Homeodomain-like
         (132 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    27   0.73 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   2.9  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   5.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   6.8  

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 9   DKYRVVYSDHQRLELEKEFHYSRYITIR 36
           DK R  + + QRL+ EKEF  SR   ++
Sbjct: 298 DKQRKEFENRQRLQKEKEFQKSREAALK 325


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 4   KTRTKDKYRVVYSDHQRLELEK 25
           K R+KD+Y  +Y ++ R E EK
Sbjct: 329 KQRSKDEYASLYKEYTRKEQEK 350


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 38  KAELAVSLGLSERQVKIWFQN 58
           + ++   L + ER V IWFQN
Sbjct: 196 REKIGRELNIPERSVTIWFQN 216


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 12   RVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGL 47
            R+++   Q+L  +KE H S+  T++ +++  + L L
Sbjct: 2994 RILFVQPQQLNCKKEIHLSKVKTVKLQSKEHIFLQL 3029


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,129
Number of Sequences: 5004
Number of extensions: 7041
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 132
length of database: 2,362,478
effective HSP length: 66
effective length of query: 66
effective length of database: 2,032,214
effective search space: 134126124
effective search space used: 134126124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)