GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001180-TA|BGIBMGA001180-PA|IPR001356|Homeobox,
IPR000047|Helix-turn-helix motif, lambda-like repressor,
IPR009057|Homeodomain-like
         (132 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    69   1e-14
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    69   1e-14
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    68   3e-14
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    66   1e-13
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    56   1e-10
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    54   5e-10
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    53   9e-10
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    49   1e-08
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        43   1e-06

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 69.3 bits (162), Expect = 1e-14
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 12 RVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
          R  Y+ +Q LELEKEFHY+RY+T RR+ E+A +L L+ERQ+KIWFQN
Sbjct: 12 RQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 58


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 69.3 bits (162), Expect = 1e-14
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 12  RVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
           R  Y+ +Q LELEKEFHY+RY+T RR+ E+A +L L+ERQ+KIWFQN
Sbjct: 274 RQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 320


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 68.1 bits (159), Expect = 3e-14
 Identities = 29/49 (59%), Positives = 40/49 (81%)

Query: 10 KYRVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
          + R  Y+ +Q LELEKEFH++RY+T RR+ E+A +L L+ERQ+KIWFQN
Sbjct: 10 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 58


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 66.1 bits (154), Expect = 1e-13
 Identities = 29/47 (61%), Positives = 37/47 (78%)

Query: 12 RVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
          R  Y+  Q LELEKEFHY+ Y+T RR+ E+A +L L+ERQ+KIWFQN
Sbjct: 12 RQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQN 58


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 56.4 bits (130), Expect = 1e-10
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 3  RKTRTKDKYRVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
          RK +   K R  ++  Q L LEK+F   +Y+TI  +AE + SL L+E QVKIWFQN
Sbjct: 4  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQN 59


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 54.0 bits (124), Expect = 5e-10
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 5  TRTKDKYRVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
          T  + + R  +S  Q   L++EF  +RY+T RR+ +L+  LGL+E Q+KIWFQN
Sbjct: 17 TPEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQN 70


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 53.2 bits (122), Expect = 9e-10
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 12 RVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
          R  +S  Q   L++EF  +RY+T RR+ +L+  LGL+E Q+KIWFQN
Sbjct: 24 RTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQN 70


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 49.2 bits (112), Expect = 1e-08
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 6  RTKDKYRVVYSDHQRLELEKEFHYSRYITIRRKAELAVSLGLSERQVKIWFQN 58
          R   + R  ++  Q + LE +F  +RY+++  +  LA+SL L+E QVKIWFQN
Sbjct: 6  REARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 58


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 42.7 bits (96), Expect = 1e-06
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 30 SRYITIRRKAELAVSLGLSERQVKIWFQN 58
          ++Y+ +  +AELA SLGL++ QVKIWFQN
Sbjct: 3  TQYLALPERAELAASLGLTQTQVKIWFQN 31


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578
Number of Sequences: 429
Number of extensions: 662
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 132
length of database: 140,377
effective HSP length: 52
effective length of query: 80
effective length of database: 118,069
effective search space:  9445520
effective search space used:  9445520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)