GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001179-TA|BGIBMGA001179-PA|undefined
         (117 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0392 + 24629528-24630442                                         36   0.011
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946...    27   2.9  
08_01_0602 + 5273930-5274024,5274147-5274450                           26   6.7  
01_01_0063 + 508387-509112                                             26   8.8  

>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 40  GAPATGEWTPDPHHFPKREPGEREIADMPSPA 71
           G P  G  +P P   P+REPGER     PSPA
Sbjct: 164 GRPGGGRASPSPPPPPRREPGERPTRRSPSPA 195


>04_04_0689 -
          27292271-27292709,27293717-27293856,27294572-27294664,
          27295614-27296012,27296258-27296392,27296482-27296835
          Length = 519

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 31 EEQQWCAWN--GAPATGEWTPDPHHFPKREPGEREIADMPSPAR 72
          +E  W   N   A A  E +  P H  +R PG R +   P P R
Sbjct: 47 KENVWSVDNDRAAAAAAEASRGPKHRRRRRPGGRRLPPPPPPGR 90


>08_01_0602 + 5273930-5274024,5274147-5274450
          Length = 132

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 44  TGEWTPDPHHFPKREPGEREIAD 66
           TG+  P P   P+ +PGER   D
Sbjct: 108 TGDVVPSPITIPREDPGERPEVD 130


>01_01_0063 + 508387-509112
          Length = 241

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 48  TPDPHHFPKREPGEREIADMPSPARGDLA 76
           T D  H+  ++PG+   A  PSP   D A
Sbjct: 113 TDDLEHYALKQPGDATFAPAPSPEELDEA 141


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.134    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,128
Number of Sequences: 37544
Number of extensions: 107739
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 4
length of query: 117
length of database: 14,793,348
effective HSP length: 73
effective length of query: 44
effective length of database: 12,052,636
effective search space: 530315984
effective search space used: 530315984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)