GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001179-TA|BGIBMGA001179-PA|undefined
         (117 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    37   2e-04
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   3.8  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   3.8  

>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 13/16 (81%), Positives = 15/16 (93%)

Query: 100 YEWMKKPNYQTQPNPG 115
           YEWMKK +YQ+QPNPG
Sbjct: 195 YEWMKKQSYQSQPNPG 210


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 39  NGAPATGEWTPDPHHFPKREPGEREIADMPSPARG 73
           +GAPAT + TP P   PK  P   E     S  RG
Sbjct: 409 SGAPATAKPTPKP--IPKPAPSS-ETNGSSSQERG 440


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 39  NGAPATGEWTPDPHHFPKREPGEREIADMPSPARG 73
           +GAPAT + TP P   PK  P   E     S  RG
Sbjct: 409 SGAPATAKPTPKP--IPKPAPSS-ETNGSSSQERG 440


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.134    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,197
Number of Sequences: 2123
Number of extensions: 3378
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 117
length of database: 516,269
effective HSP length: 56
effective length of query: 61
effective length of database: 397,381
effective search space: 24240241
effective search space used: 24240241
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)