GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001179-TA|BGIBMGA001179-PA|undefined
         (117 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03062-1|CAA26868.1|  197|Drosophila melanogaster put. cad fragm...    31   0.38 
M21070-1|AAA28409.1|  472|Drosophila melanogaster protein ( D.me...    31   0.38 
AY069565-1|AAL39710.1|  427|Drosophila melanogaster LD29596p pro...    31   0.38 
AE014134-3283|AAN11088.1|  427|Drosophila melanogaster CG1759-PB...    31   0.38 
AE014134-3282|AAF53923.1|  427|Drosophila melanogaster CG1759-PA...    31   0.38 

>X03062-1|CAA26868.1|  197|Drosophila melanogaster put. cad fragment
           protein.
          Length = 197

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 100 YEWMKKPNYQTQPNPG 115
           ++WMKKP Y  QP PG
Sbjct: 41  FDWMKKPAYPAQPQPG 56


>M21070-1|AAA28409.1|  472|Drosophila melanogaster protein (
           D.melanogaster caudalgene (cad) encoding a maternal and
           zygotic transcript,exon 2. ).
          Length = 472

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 100 YEWMKKPNYQTQPNPG 115
           ++WMKKP Y  QP PG
Sbjct: 223 FDWMKKPAYPAQPQPG 238


>AY069565-1|AAL39710.1|  427|Drosophila melanogaster LD29596p
           protein.
          Length = 427

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 100 YEWMKKPNYQTQPNPG 115
           ++WMKKP Y  QP PG
Sbjct: 253 FDWMKKPAYPAQPQPG 268


>AE014134-3283|AAN11088.1|  427|Drosophila melanogaster CG1759-PB,
           isoform B protein.
          Length = 427

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 100 YEWMKKPNYQTQPNPG 115
           ++WMKKP Y  QP PG
Sbjct: 253 FDWMKKPAYPAQPQPG 268


>AE014134-3282|AAF53923.1|  427|Drosophila melanogaster CG1759-PA,
           isoform A protein.
          Length = 427

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 100 YEWMKKPNYQTQPNPG 115
           ++WMKKP Y  QP PG
Sbjct: 253 FDWMKKPAYPAQPQPG 268


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.134    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,446,947
Number of Sequences: 52641
Number of extensions: 177861
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 8
length of query: 117
length of database: 24,830,863
effective HSP length: 76
effective length of query: 41
effective length of database: 20,830,147
effective search space: 854036027
effective search space used: 854036027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)