GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001179-TA|BGIBMGA001179-PA|undefined
         (117 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   0.85 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   0.85 
AL032637-22|CAM84821.1|  127|Caenorhabditis elegans Hypothetical...    26   6.0  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 42  PATGEWTPDPHHFPKREPGEREIADMPSP 70
           P++G W P P   P R PG   +  MP P
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 42  PATGEWTPDPHHFPKREPGEREIADMPSP 70
           P++G W P P   P R PG   +  MP P
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329


>AL032637-22|CAM84821.1|  127|Caenorhabditis elegans Hypothetical
           protein Y43F8C.23 protein.
          Length = 127

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 36  CAWNGAPATGEWT--PDPHHFPKREPGEREIADM-PSP 70
           C   G P  G WT  PDP   P  E    ++    P+P
Sbjct: 76  CVSGGGPPAGSWTFKPDPTEEPTTEESTTKLTSTEPAP 113


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,869
Number of Sequences: 27539
Number of extensions: 79030
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 3
length of query: 117
length of database: 12,573,161
effective HSP length: 72
effective length of query: 45
effective length of database: 10,590,353
effective search space: 476565885
effective search space used: 476565885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)