GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001179-TA|BGIBMGA001179-PA|undefined
         (117 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29180.1 68417.m04175 leucine-rich repeat protein kinase, put...    26   7.5  
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF...    26   7.5  
At5g07190.1 68418.m00819 embryo-specific protein 3, putative sim...    25   9.9  

>At4g29180.1 68417.m04175 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 911

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 38  WNGAPATGEWTPDPHH 53
           WNG+P +G + P P +
Sbjct: 305 WNGSPVSGAFNPSPEY 320


>At3g18360.1 68416.m02335 VQ motif-containing protein contains
          PF05678: VQ motif
          Length = 285

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 52 HHFPKREPGERE--IADMPSPA 71
          HH PKREP E    I   PSP+
Sbjct: 19 HHHPKREPNENNSGILYTPSPS 40


>At5g07190.1 68418.m00819 embryo-specific protein 3, putative
           similar to embryo-specific protein 3 GI:3335171 from
           [Arabidopsis thaliana]
          Length = 213

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 35  WCAWNGAPATGE-WTPD--PHHFPKREPGEREIADMPSPARGDLA 76
           W   N    TG   +PD  P HFP   P E      P P R   A
Sbjct: 142 WYGHNNCNTTGRPSSPDLPPPHFPPEFPPETPTTPPPPPPRPSAA 186


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.134    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,169
Number of Sequences: 28952
Number of extensions: 73850
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 3
length of query: 117
length of database: 12,070,560
effective HSP length: 72
effective length of query: 45
effective length of database: 9,986,016
effective search space: 449370720
effective search space used: 449370720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)