GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001178-TA|BGIBMGA001178-PA|undefined
         (103 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   1.5  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   1.5  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   1.5  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   2.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   4.5  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    19   7.9  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 2   GVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPE 41
           G R+N  +  KR+  ++    SP     + PS    PPP+
Sbjct: 199 GFRENGKSSAKRKQLVSEHPDSPNSKKSATPS----PPPQ 234


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 77  MTAKGMINTFIVVFIMTLKTVVFRFL 102
           MT  G+ +  I+ F+++ +T  F FL
Sbjct: 58  MTFSGVTSPTIMKFVLSFRTGSFTFL 83


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 77  MTAKGMINTFIVVFIMTLKTVVFRFL 102
           MT  G+ +  I+ F+++ +T  F FL
Sbjct: 58  MTFSGVTSPTIMKFVLSFRTGSFTFL 83


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 63 AKAGPGPASYNTEGMTAKGMINT 85
          A   P PA+   EG    G IN+
Sbjct: 41 ASGAPHPAALPIEGCNETGFINS 63


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 63 AKAGPGPASYNTEGMTAKGMINT 85
          A   P PA+   EG    G IN+
Sbjct: 41 ASGAPHPAALPIEGCNETGFINS 63


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 64   KAGPGPASYNTEGMTAKGM 82
            K G GP S + +  TA+G+
Sbjct: 1081 KVGAGPLSDDIKAYTAEGV 1099


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 31  LPSLIGKPPPE 41
           +PS I  PPPE
Sbjct: 209 VPSTIPPPPPE 219


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,289
Number of Sequences: 317
Number of extensions: 1113
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 103
length of database: 114,650
effective HSP length: 48
effective length of query: 55
effective length of database: 99,434
effective search space:  5468870
effective search space used:  5468870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)