GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001178-TA|BGIBMGA001178-PA|undefined
         (103 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    36   0.002
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   0.78 
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   1.8  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   3.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   5.5  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    24   5.5  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    23   7.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    23   7.3  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    23   9.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   9.6  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   9.6  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    23   9.6  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    23   9.6  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 29   VSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKGMIN 84
            V L S+   PP  +   + P  +  +K+DPL +I +A P P +    G T+K  ++
Sbjct: 1935 VPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSKRYVD 1990


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 46  RAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKGMINTFIVVFIM 92
           R   FT  QK     +I++    P        TA+G + TF+V FI+
Sbjct: 129 RNKTFTAPQKPGYFESISQITSSPRLNTLIANTAEGQVLTFVVTFIL 175


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 8   WTPTKRRGPIAAEASSPGPAVVSLPSLIG 36
           + P  RR P+ A + SP  + + + + IG
Sbjct: 350 FNPAMRRSPVGAASRSPSRSTIGISNRIG 378


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 72  YNTEGMTAKGMINTFIVVFIM---TLKTVVFRFL 102
           Y T G+ +K MIN   +  I+   TLK   FRFL
Sbjct: 8   YLTNGLRSKQMINFLCIQNILSARTLKICRFRFL 41


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 1334

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 12 KRRGPIAAEASSPG---PAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPG 68
          ++R P A   S+P    PA VS   L   PPP  R PR P       L P ++     P 
Sbjct: 26 RKREP-ARTVSTPAFMEPAPVSKKPL---PPPTRRLPRKPLPFRSTSLQPPSS---QPPA 78

Query: 69 PASYNTEGMTAKGM 82
          P ++  E    K +
Sbjct: 79 PPTHQREASPVKNI 92


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 3   VRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANI 62
           ++ NP + +K +   +   +  GP ++S P +I    P  +  +  +    +K  P + +
Sbjct: 248 LQTNPSSISKGKKNNSNNTTQKGPNIISSPQVINASSPVRKAGKKKS----KKALPTSPL 303

Query: 63  AKAGPGPASYNT 74
           + + P  ASYN+
Sbjct: 304 SSSSP-DASYNS 314


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 172

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 4  RQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAP 48
          R+    P  RR   AA A S   A    P  +  PP  SR  +AP
Sbjct: 3  RRRSAAPPPRR---AAPARSASTAAALPPRTMAPPPAPSRVQQAP 44


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 15  GPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAP 48
           G  A+  ++  PA  S  SL GKP        AP
Sbjct: 153 GKPASTTNTTTPAAASTGSLFGKPAATGTTSNAP 186


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 46  RAPAFTFGQKLDPLANIAKAGPGPASY 72
           R  +   GQ+LD LA++   G  PA +
Sbjct: 102 RGKSSLMGQELDSLADLISFGVSPAVF 128


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 10  PTKRRGPIAAEASSPGPAVVSLPSLIGKPPP-ESRKPRAPAFTFGQ 54
           P     PIA    +  PA   LP     PPP  +  P AP  +  +
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAE 493


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 2   GVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAF 50
           G    P+  T      ++  S+P  A V +    G P   +  P  PA+
Sbjct: 276 GSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYNPAPPAY 324


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 949

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 28 VVSLPSL-IGKPPPESRKPRAPAFT 51
          + S PS+ +G PP ES    AP+F+
Sbjct: 4  ISSAPSISLGYPPTESSAHLAPSFS 28


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 9   TPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPG 68
           TP+     +    ++   A    P     PPP   +P A A T      P+A  A A P 
Sbjct: 338 TPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVT-TPVAAPVAAAAAAVPV 396

Query: 69  P 69
           P
Sbjct: 397 P 397


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,345
Number of Sequences: 5004
Number of extensions: 19652
Number of successful extensions: 62
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 14
length of query: 103
length of database: 2,362,478
effective HSP length: 63
effective length of query: 40
effective length of database: 2,047,226
effective search space: 81889040
effective search space used: 81889040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)