GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001177-TA|BGIBMGA001177-PA|IPR000595|Cyclic
nucleotide-binding
         (508 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            26   2.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   2.1  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   4.8  
AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F pro...    24   8.4  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   8.4  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 402  NPGSSFGFGENMRDRRIVALTPVDCMLLPKIWLLQRNTANIWTRIQHY 449
            N G   G      D + +A+   + + LPK  L+Q N+ + + R  HY
Sbjct: 2051 NRGKLIGISNAATDEKFIAIDN-NSLGLPKRVLIQPNSRHAYQRTYHY 2097


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 402  NPGSSFGFGENMRDRRIVALTPVDCMLLPKIWLLQRNTANIWTRIQHY 449
            N G   G      D + +A+   + + LPK  L+Q N+ + + R  HY
Sbjct: 2052 NRGKLIGISNAATDEKFIAIDN-NSLGLPKRVLIQPNSRHAYQRTYHY 2098


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 288  NNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIEL 347
            +N R S  S  +TS+ +   R  T S    +   +    S G +     + V+  E  ++
Sbjct: 1104 DNDRTSLYSARNTSEEQRGRRHPTPSPPPRAVGRRAEVRSLGERYRRQLLVVE--ERRQI 1161

Query: 348  SASTAAVPSTQENRVLLDPTEQGRNSHRMSVIPEAIV 384
            S  +    ++QE+  L++ + QG N    +   EA V
Sbjct: 1162 SGHSVGGVTSQEDGTLVEASRQGMNGAEKTAATEADV 1198


>AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F
           protein.
          Length = 101

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 436 QRNTANIWTRIQHYLDKKIPT 456
           Q N   +  RIQH+ D+++PT
Sbjct: 79  QENLYRLIGRIQHFRDEQLPT 99


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 178  LQASVQKQWDEVKRAMSAFTYFDGLDEVARRE 209
            + AS+Q+ WD+ + A++A       +EVA  E
Sbjct: 1003 ITASLQQAWDDERAALAAHGNEQHFEEVADLE 1034


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,612
Number of Sequences: 2123
Number of extensions: 19680
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 6
length of query: 508
length of database: 516,269
effective HSP length: 67
effective length of query: 441
effective length of database: 374,028
effective search space: 164946348
effective search space used: 164946348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)