Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001177-TA|BGIBMGA001177-PA|IPR000595|Cyclic
nucleotide-binding
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 44 2e-04
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 43 4e-04
At4g18290.1 68417.m02714 inward rectifying potassium channel (KA... 43 4e-04
At4g32500.1 68417.m04626 potassium channel protein, putative sim... 42 7e-04
At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden... 42 0.001
At4g32650.2 68417.m04648 inward rectifying potassium channel, pu... 39 0.007
At4g32650.1 68417.m04647 inward rectifying potassium channel, pu... 39 0.007
At2g25600.1 68415.m03066 potassium channel protein, putative sim... 39 0.009
At5g46240.1 68418.m05691 inward rectifying potassium channel (KA... 37 0.036
At5g37500.1 68418.m04516 guard cell outward rectifying K+ channe... 36 0.063
At5g14740.2 68418.m01730 carbonic anhydrase 2 / carbonate dehydr... 35 0.11
At5g14740.1 68418.m01729 carbonic anhydrase 2 / carbonate dehydr... 35 0.11
At4g00510.1 68417.m00070 cyclic nucleotide-binding domain-contai... 33 0.34
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 33 0.34
At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ... 33 0.45
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 33 0.59
At3g19680.1 68416.m02493 expressed protein 32 0.78
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ... 32 0.78
At4g31440.1 68417.m04468 hypothetical protein 32 1.0
At5g54300.1 68418.m06763 expressed protein contains similarity t... 31 1.4
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 31 1.8
At5g53930.1 68418.m06710 expressed protein 31 2.4
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 31 2.4
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 31 2.4
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 31 2.4
At2g15270.1 68415.m01741 expressed protein 30 3.2
At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar ... 30 3.2
At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative si... 30 4.2
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P... 30 4.2
At1g60230.1 68414.m06783 radical SAM domain-containing protein ... 30 4.2
At5g40450.1 68418.m04905 expressed protein 29 5.5
At5g22320.1 68418.m02604 leucine-rich repeat family protein cont... 29 5.5
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ... 29 5.5
At2g25660.1 68415.m03075 expressed protein 29 5.5
At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containi... 29 7.3
At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containi... 29 7.3
At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP... 29 7.3
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 29 7.3
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 29 7.3
At1g56660.1 68414.m06516 expressed protein 29 7.3
At1g76820.1 68414.m08939 expressed protein 29 9.6
At1g61570.1 68414.m06938 mitochondrial import inner membrane tra... 29 9.6
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 44.4 bits (100), Expect = 2e-04
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSG---EVTVTQMVFDELLQQYVSIEIGVMQSGDLFGE 145
+++ P I+ Q LYF+ G E+ +T+ +E+ + V+Q FGE
Sbjct: 422 EFFLPGEVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEEI--------VAVLQPDHSFGE 473
Query: 146 VSLLHGIPRTATVTTVGHCELLALMKEDFKNVLQ 179
+S+L IP+ TV C +L L K+ F N+L+
Sbjct: 474 ISILCNIPQPYTVRVAELCRILRLDKQSFMNILE 507
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 43.2 bits (97), Expect = 4e-04
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y P ++ Q++ +Y IVSGEV +++ E+ ++ V +G ++ GD+FGEV
Sbjct: 413 EYIPPREDVIMQNEAPDDVYIIVSGEV---EIIDSEMERESV---LGTLRCGDIFGEVGA 466
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQASVQKQWDEVKRAMSAFTYFDGLD 203
L P++ T T +LL L +Q Q +K + LD
Sbjct: 467 LCCRPQSYTFQTKSLSQLLRLKTSFLIETMQIKQQDNATMLKNFLQHHKKLSNLD 521
>At4g18290.1 68417.m02714 inward rectifying potassium channel (KAT2)
identical to inward rectifying K+ channel [Arabidopsis
thaliana] gi|12666980|emb|CAC28122; Shaker-type channel
(1P/6TM), PMID:11500563
Length = 697
Score = 43.2 bits (97), Expect = 4e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y+ P ++ Q++ LY +VSG V T V +E Q G GD FGE+ +
Sbjct: 396 EYFPPREDVILQNEAPTDLYILVSGAVDFTVYVGEEDQVQ------GKAVVGDAFGEIGV 449
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQASVQ 183
L P+ TV T ++L + K+ + ++A V+
Sbjct: 450 LCYTPQPFTVRTTELSQILRISKKSLMSAMRAHVE 484
>At4g32500.1 68417.m04626 potassium channel protein, putative
similar to potassium channel [Solanum tuberosum]
gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 880
Score = 42.3 bits (95), Expect = 7e-04
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y+ P ++ +++ Y +V+G V + V V +G Q+G +FGEV +
Sbjct: 415 EYFPPKEDVILRNEAPSDFYIMVTGAVDIIARV------NGVDQVVGEAQTGHVFGEVGV 468
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQASV 182
L P+ TV T +LL L + F N++QA+V
Sbjct: 469 LCYRPQLFTVRTKRLSQLLRLNRTAFLNLVQANV 502
>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
identical to AKT1 [Arabidopsis thaliana]
gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 857
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y+ P ++ Q++ Y +V+G + + D + V +++GD+ GE+ +
Sbjct: 391 EYFPPKEDVILQNEAPTDFYILVNGTADLVDV--DTGTESIVR----EVKAGDIIGEIGV 444
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQASV 182
L P+ TV T C+LL + + F N++QA+V
Sbjct: 445 LCYRPQLFTVRTKRLCQLLRMNRTTFLNIIQANV 478
>At4g32650.2 68417.m04648 inward rectifying potassium channel,
putative (KAT3) (AKT4) (KC1) identical to K+ inward
rectifying channel protein KC1 [Arabidopsis thaliana]
gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
[Arabidopsis thaliana] gi|1165000|emb|CAA63601;
Shaker-type channel (1P/6TM), PMID:11500563
Length = 597
Score = 39.1 bits (87), Expect = 0.007
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y+ P I+ Q++ Y IVSG V + + + + + V ++G G + GE+ +
Sbjct: 425 EYFPPKMEIILQNEIPTDFYVIVSGGVDI---IASKGVSEQVLAKLG---PGSMAGEIGV 478
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQASVQKQWDEVKRAMSAFTYFDGLDEVARR 208
+ IP+ TV T +++ + FK ++Q+ D + TY GL++ ++
Sbjct: 479 VFNIPQPFTVRTRRLSQVIRIGHHKFKEMVQS--DNDVDAKMIIANFMTYLKGLNDELKK 536
Query: 209 E 209
E
Sbjct: 537 E 537
>At4g32650.1 68417.m04647 inward rectifying potassium channel,
putative (KAT3) (AKT4) (KC1) identical to K+ inward
rectifying channel protein KC1 [Arabidopsis thaliana]
gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
[Arabidopsis thaliana] gi|1165000|emb|CAA63601;
Shaker-type channel (1P/6TM), PMID:11500563
Length = 662
Score = 39.1 bits (87), Expect = 0.007
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y+ P I+ Q++ Y IVSG V + + + + + V ++G G + GE+ +
Sbjct: 425 EYFPPKMEIILQNEIPTDFYVIVSGGVDI---IASKGVSEQVLAKLG---PGSMAGEIGV 478
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQASVQKQWDEVKRAMSAFTYFDGLDEVARR 208
+ IP+ TV T +++ + FK ++Q+ D + TY GL++ ++
Sbjct: 479 VFNIPQPFTVRTRRLSQVIRIGHHKFKEMVQS--DNDVDAKMIIANFMTYLKGLNDELKK 536
Query: 209 E 209
E
Sbjct: 537 E 537
>At2g25600.1 68415.m03066 potassium channel protein, putative
similar to potassium channel [Lycopersicon esculentum]
GI:8980432; member of the 1 pore, 6 transmembrane
(1P/6TM- Shaker-type) K+ channel family, PMID:11500563;
Shaker Pollen Inward K+ Channel (SPIK) PMID:11825875
Length = 888
Score = 38.7 bits (86), Expect = 0.009
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y+ P ++ Q++ Y +V+G V + V V I Q G +FGEV +
Sbjct: 417 EYFPPKEDVILQNEAPTDFYILVTGAVDIIARV------NGVEQAISEAQRGHVFGEVGV 470
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQASV 182
L P+ TV T +LL L + N++QA+V
Sbjct: 471 LCYRPQLFTVRTKRLSQLLRLNRTVLLNLVQANV 504
>At5g46240.1 68418.m05691 inward rectifying potassium channel (KAT1)
identical to K+ channel [Arabidopsis thaliana]
gi|1165000|emb|CAA63601; Shaker-type channel (1P/6TM),
PMID:11500563
Length = 677
Score = 36.7 bits (81), Expect = 0.036
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSL 148
+Y+ P I+ Q++ LY +VSG V T V+ + Q+ G G+ FGEV +
Sbjct: 396 EYFPPKEDIILQNEAPTDLYILVSGAVDFT--VYVDGHDQFQ----GKAVIGETFGEVGV 449
Query: 149 LHGIPRTATVTTVGHCELLALMKEDFKNVLQA 180
L+ P+ TV T ++L + + + + A
Sbjct: 450 LYYRPQPFTVRTTELSQILRISRTSLMSAMHA 481
>At5g37500.1 68418.m04516 guard cell outward rectifying K+ channel
(GORK) identical to guard cell outward rectifying K+
channel [Arabidopsis thaliana] gi|11414742|emb|CAC17380;
member of the 1 pore, 6 transmembrane (1P/6TM) Shaker K+
channel family, PMID:11500563
Length = 820
Score = 35.9 bits (79), Expect = 0.063
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 89 KYYGPCRTIVRQHQDAHALYFIVSG--EVTVTQMVFDELLQQYVSIEIGVMQSGDLFGEV 146
+Y+ P I Q LYF+ G E VT+ E + V++ +G S FG++
Sbjct: 405 EYFLPGEVITEQGNVVDHLYFVCEGLLEALVTKTDGSE---ESVTL-LGPHTS---FGDI 457
Query: 147 SLLHGIPRTATVTTVGHCELLALMKEDFKNVLQ 179
S++ I + TV C LL L K+ F N+L+
Sbjct: 458 SIICNISQPFTVRVCELCHLLRLDKQSFSNILE 490
>At5g14740.2 68418.m01730 carbonic anhydrase 2 / carbonate
dehydratase 2 (CA2) (CA18) nearly identical to SP|P42737
Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase
2) {Arabidopsis thaliana}
Length = 259
Score = 35.1 bits (77), Expect = 0.11
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 167 LALMKEDFKNVLQASVQKQWDEVKRAMSAFTY-FDGLDEVARREGCIVAKMKSYEQNETL 225
L + K+D K+V A V+K E++ A S+ + FD ++ + +EG + K + YE N L
Sbjct: 16 LLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERI--KEGFVTFKKEKYETNPAL 73
Query: 226 LGD 228
G+
Sbjct: 74 YGE 76
>At5g14740.1 68418.m01729 carbonic anhydrase 2 / carbonate
dehydratase 2 (CA2) (CA18) nearly identical to SP|P42737
Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase
2) {Arabidopsis thaliana}
Length = 331
Score = 35.1 bits (77), Expect = 0.11
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 167 LALMKEDFKNVLQASVQKQWDEVKRAMSAFTY-FDGLDEVARREGCIVAKMKSYEQNETL 225
L + K+D K+V A V+K E++ A S+ + FD ++ + +EG + K + YE N L
Sbjct: 88 LLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERI--KEGFVTFKKEKYETNPAL 145
Query: 226 LGD 228
G+
Sbjct: 146 YGE 148
>At4g00510.1 68417.m00070 cyclic nucleotide-binding
domain-containing protein contains Pfam profile: PF00027
cyclic nucleotide-binding domain
Length = 175
Score = 33.5 bits (73), Expect = 0.34
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 80 KKLAAVTYFKYYGPCRTIVRQHQDAHALYFIVSGEV--TVTQMVFDELLQQYVSIEIGVM 137
K+++ V FK Y +VR++Q+ +YF++ G+V V + +E Q++ +
Sbjct: 25 KRISEVVVFKGYDRGDYVVRENQNVDGVYFLLQGQVRAQVLRSAGEENYQEF------PL 78
Query: 138 QSGDLFGEVSLLHGIPRTATVTTVGHCELLALMKEDFKNVLQASVQKQWDEVKRAMSAFT 197
+ D FG + G +A V V L LM D + +L+ D+ + +
Sbjct: 79 KRYDFFGHG--IFGDVYSADVVAVTELTCLLLM-SDHRALLEIKSVSDSDKERCLVEDIL 135
Query: 198 YFDGLD 203
Y + LD
Sbjct: 136 YLEPLD 141
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 33.5 bits (73), Expect = 0.34
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 80 KKLAAVTYFKYYGPCRTIVRQHQDAHALYFIVSGEVTVTQMVFDE-----LLQQYVSIEI 134
KK+A V K YG +VR+ Q YFI+ GE V+ ++ LL+QY +
Sbjct: 25 KKIAQVVVPKRYGKGDYVVREDQTWDGCYFILQGEAQVSGPDEEDNRSEFLLKQYDYFGV 84
Query: 135 GVMQSGDLFGEVSLLHGIPRTATVTTVGHCELL 167
G+ SG++ ++ T V HC LL
Sbjct: 85 GL--SGNVH-SADIVAMSQLTCLVLPRDHCHLL 114
>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
identical to acetyl-CoA carboxylase 2 (ACC2) [Arabidopsis
thaliana] GI:11869928
Length = 1755
Score = 33.1 bits (72), Expect = 0.45
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 12 LDPEQLMKKKFRAKCLFRALGRL--VMANAHWLIEDSENYEGLENVKRRVQQAMRGKPKK 69
L+PE +++ KFR K L +GRL + N I+D++ + N++ +Q K ++
Sbjct: 1533 LEPEGMIEIKFRRKELLECMGRLDQTLINLKANIQDAKRNKAYANIELLQKQI---KTRE 1589
Query: 70 KQLLSI 75
KQLL +
Sbjct: 1590 KQLLPV 1595
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 32.7 bits (71), Expect = 0.59
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 288 NNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIEL 347
++RR+S + E + R+ I K+ + +++ S S GN V++S E++E
Sbjct: 786 SSRRQSSRATEESISREVIAYKQRSGLQCSNTASPTSIRKSGNLVREVKLSSSSSEVLES 845
Query: 348 SASTAAVPSTQENRVLL 364
S A+ T + + L
Sbjct: 846 DTSMASHDDTTASTMTL 862
>At3g19680.1 68416.m02493 expressed protein
Length = 491
Score = 32.3 bits (70), Expect = 0.78
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 275 SEQDLDTKYFGAYNNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGES 334
++Q + T FG+ N+ R+ + S+S I R+ NS + SK KG S
Sbjct: 210 TKQAVFTCKFGSRNSNSGDRNLLHSSSMMSEISSTRSCISSMNSEKEQPSKE---RKGWS 266
Query: 335 VQI-SVDGPEIIELSASTAAVPSTQENRV 362
+ + + G + S T VPS NRV
Sbjct: 267 ITVHDLSGSPVAMASMVTPFVPSPGSNRV 295
>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
identical to acetyl-CoA carboxylase 1 (ACC1) [Arabidopsis
thaliana] GI:11869927
Length = 2247
Score = 32.3 bits (70), Expect = 0.78
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 12 LDPEQLMKKKFRAKCLFRALGRL--VMANAHWLIEDSENYEGLENVKRRVQQAMRGKPKK 69
L+PE ++ KFR K L +GRL + + ++D++ E N++ QQ K ++
Sbjct: 2025 LEPEGTIEIKFRTKELLECMGRLDQKLISLKAKLQDAKQSEAYANIELLQQQI---KARE 2081
Query: 70 KQLLSI 75
KQLL +
Sbjct: 2082 KQLLPV 2087
>At4g31440.1 68417.m04468 hypothetical protein
Length = 379
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 305 SIERKRTESILKNSSLSKQ--SKHSEGNKGESVQI-SVDGPE 343
S+ K SIL+N+SL+K S H G+ G+S+ + DGPE
Sbjct: 61 SLHNKLIRSILRNASLAKSPPSVHQSGHPGKSLVLGKEDGPE 102
>At5g54300.1 68418.m06763 expressed protein contains similarity to
cotton fiber expressed protein 1 [Gossypium hirsutum]
gi|3264828|gb|AAC33276
Length = 326
Score = 31.5 bits (68), Expect = 1.4
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 295 DSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIELSASTAAV 354
+ ++ S ++E R ++ + SK+S S + E ++ D PEI L ST
Sbjct: 126 EKIDDVSINPTVEAIRKFPEVQEAEKSKESSDSPEPETEKPKLKNDSPEISILKHSTRKP 185
Query: 355 PSTQENRVLLDPTEQGRNSHRMSV 378
P + + L +E G + V
Sbjct: 186 PRFNQQKSLKSNSEGGNKKTALGV 209
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 800
Score = 31.1 bits (67), Expect = 1.8
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 286 AYNNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEII 345
AY N + D+ + ++++S ++K ++LK ++ + +H E E+ I D +
Sbjct: 533 AYINLSDDEDNDTAPTEKESQQKKEETNVLKEENVEEHDEHDETEDQEAYVILSDDED-- 590
Query: 346 ELSASTAAVPSTQENRVLLDPTEQGRNSH 374
+A T Q+ P E+ H
Sbjct: 591 NGTAPTEKESQPQKEETTEVPKEENVEEH 619
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 274 ESEQDLDTKYFGAYNNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGE 333
ES+ D D R + +D ++K + RKR + L +SS S + ++G++ +
Sbjct: 81 ESDDDSDDDRLLKKKKRSKRKDENVGKKKKKVVSRKRRKRDLSSSSTSSEQSDNDGSESD 140
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 30.7 bits (66), Expect = 2.4
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 274 ESEQDLDTKYFGAYNNRRESRDSVESTSQRKSIERK--RTESILKNSSLSKQSKHSEGNK 331
E E LD+K +RESRD TS+ K ER+ R + ++S +S++S+ +G K
Sbjct: 28 EIEDQLDSK------PKRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEK 81
Query: 332 GE 333
+
Sbjct: 82 SK 83
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 30.7 bits (66), Expect = 2.4
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 274 ESEQDLDTKYFGAYNNRRESRDSVESTSQRKSIERK--RTESILKNSSLSKQSKHSEGNK 331
E E LD+K +RESRD TS+ K ER+ R + ++S +S++S+ +G K
Sbjct: 28 EIEDQLDSK------PKRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEK 81
Query: 332 GE 333
+
Sbjct: 82 SK 83
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 30.7 bits (66), Expect = 2.4
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 274 ESEQDLDTKYFGAYNNRRESRDSVESTSQRKSIERK--RTESILKNSSLSKQSKHSEGNK 331
E E LD+K +RESRD TS+ K ER+ R + ++S +S++S+ +G K
Sbjct: 28 EIEDQLDSK------PKRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEK 81
Query: 332 GE 333
+
Sbjct: 82 SK 83
>At2g15270.1 68415.m01741 expressed protein
Length = 194
Score = 30.3 bits (65), Expect = 3.2
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 276 EQDLDTKYFGAYNNRRESRD-SVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGES 334
EQD T+ YN R + + ++ ++K+ E K ++ LK KQ K + K +
Sbjct: 92 EQDRLTRMDIDYNKRLKMAEFTIRREEKQKAAEEKTSKKRLKRQK-KKQKKQEKKQKPNT 150
Query: 335 VQISVDGPEIIELSASTAAVPSTQENRVL 363
+ V P + E+S S +E VL
Sbjct: 151 TEEEVKQPRVGEIS-SDEGEDEVEEESVL 178
>At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar to
GF14 epsilon isoform GI:1022778 from [Arabidopsis
thaliana]; contains Pfam profile: PF00244 14-3-3
proteins
Length = 245
Score = 30.3 bits (65), Expect = 3.2
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 167 LALMKEDFKNVLQASVQKQWDEVKRAMS-AFTYFDGLDEVARREGCIVAKMKSYEQNETL 225
LAL F + S++ VK+A A T DGLD+ E + +M Y +
Sbjct: 175 LALNFSIFNYEIHKSIESACKLVKKAYDEAITELDGLDKNICEESMYIIEMLKYNLSTWT 234
Query: 226 LGDGVG 231
GDG G
Sbjct: 235 SGDGNG 240
>At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase (EC 2.4.1.14)
isoform 1 - Citrus unshiu, EMBL:AB005023
Length = 1043
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 272 PDESEQDLDTKYFGAYNNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNK 331
P E L+ + +N R+ + E +QR + R E + ++ + SEG K
Sbjct: 70 PQERNTRLENMCWRIWNLARQKKQHEEKEAQRLAKRRLEREKGRREATADMSEEFSEGEK 129
Query: 332 GESV-QISVDG 341
G+ + IS G
Sbjct: 130 GDIISDISTHG 140
>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At2g11345, At3g42690
Length = 1200
Score = 29.9 bits (64), Expect = 4.2
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 285 GAYNNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQ--ISVDGP 342
GA + + T Q + +RKR E +SLS S S N G +V I VDG
Sbjct: 565 GAPETPKSKSKKKKETKQPVTRKRKREEV----TSLSSGSSSSGLNHGPAVDTDIGVDGG 620
Query: 343 EIIELSASTAAVPSTQENRVLLDPTEQGRNSHRMSVIPEA 382
+ L S + + +P E GR S S +P A
Sbjct: 621 GTVNLEGSVDPWELYGSTKNISEPQEMGRES-PTSPVPTA 659
>At1g60230.1 68414.m06783 radical SAM domain-containing protein
contains Pfam profile PF04055: radical SAM domain
protein
Length = 458
Score = 29.9 bits (64), Expect = 4.2
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 110 IVSGEV-TVTQMVFDELLQQYVSIEIGVMQSGDLFGEVSLLHGIPRTATVTTVGHCELLA 168
++S EV ++T +VF + + + +I+ V+++ ++ + + LH PR TV+T G L
Sbjct: 239 LLSHEVGSITNVVFMGMGEPFHNID-NVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLK 297
Query: 169 LMKEDFKNVLQASVQKQWDEVK 190
+ L S+ DEV+
Sbjct: 298 RFLRESNCALAVSLNATTDEVR 319
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.5 bits (63), Expect = 5.5
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 278 DLDTKYFGAYNNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQI 337
D + FG + S ES +S+E K E++ SS K + GES +
Sbjct: 1408 DAQAEEFGEHTEPCSSEIKDESQGSEESVEVKSKETVQGESSEEKDVNMLDVQSGESEKY 1467
Query: 338 SVDGPEIIELSAST-----AAVPSTQENRVLLDPTEQGRNSHRMSVIPEAIVEP 386
+ P+I +S + +PS E L + T SV+ +++ P
Sbjct: 1468 QENEPDISLVSKTENGDKFEEIPSVVEGAGLDETTHNQTLLDVESVVKQSLDTP 1521
>At5g22320.1 68418.m02604 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 452
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 278 DLDTKYFGAYNNR-RESRDSVESTSQRKSIER-KRTESILKNSSLSKQSKHSEGN 330
D D + F AY+N+ E S E ++KS +R K E + N + K S+ N
Sbjct: 274 DTDDETFDAYHNKSAEEEQSKEDRKRKKSSKRNKSEEEEVNNEDHKSKKKKSKSN 328
>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 443
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 324 SKHSEGNKGESVQISVDGPEIIELSASTAAVPSTQENRVLLDP--TEQGRNSHRMSVIPE 381
S H +G G + ++ V E+ ELS A Q +R + P + GR S + PE
Sbjct: 353 SDHGDGKHGNNERLHVKDGELGELSPDIRATVDEQSDRPSMHPRRSSWGRKSGSWDMSPE 412
Query: 382 AI 383
+
Sbjct: 413 VM 414
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 225 LLGDGVGVA----NFVYFVLSGRCQMIESIQVVVTTRLGRDFYSLYDPYIPPDESEQDLD 280
+LG+ + VA V F+LSGR +++ +++ + + Y L Y+ P ++DL
Sbjct: 1231 VLGEALDVAVRWSGDVCFMLSGRLEVMITVEKTILEQ-SNSRYELQGEYVLPGSRDRDLG 1289
Query: 281 TKYFGAY 287
K G++
Sbjct: 1290 QKEAGSF 1296
>At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 277
Score = 29.1 bits (62), Expect = 7.3
Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 292 ESRDSVESTSQRKSIERKRTESILKNSSLSKQS--KHSEGNKGESVQISVDGPEII---- 345
+ D E+ S+R+ + + E KN +++ Q +HSE K E +++ +G I+
Sbjct: 38 DDSDGFETASEREISDEEGEEDGTKNDAVTSQEEPQHSE-KKEEQIELMSEGEAIVDDGS 96
Query: 346 --ELSASTAAVPSTQENRVLLDPT-EQGRNSHRMSVIPEAIVEPLPQNLRTYFMQVCIFN 402
E + + A + N++ ++ E+ + + ++ +V+ LP+++ +C N
Sbjct: 97 NKEKALAEANEAKAEGNKLFVNGLYEEALSKYAFAL---ELVQELPESIE--LRSICYLN 151
Query: 403 PGSSF 407
G F
Sbjct: 152 RGVCF 156
>At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 208
Score = 29.1 bits (62), Expect = 7.3
Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 292 ESRDSVESTSQRKSIERKRTESILKNSSLSKQS--KHSEGNKGESVQISVDGPEII---- 345
+ D E+ S+R+ + + E KN +++ Q +HSE K E +++ +G I+
Sbjct: 38 DDSDGFETASEREISDEEGEEDGTKNDAVTSQEEPQHSE-KKEEQIELMSEGEAIVDDGS 96
Query: 346 --ELSASTAAVPSTQENRVLLDPT-EQGRNSHRMSVIPEAIVEPLPQNLRTYFMQVCIFN 402
E + + A + N++ ++ E+ + + ++ +V+ LP+++ +C N
Sbjct: 97 NKEKALAEANEAKAEGNKLFVNGLYEEALSKYAFAL---ELVQELPESIE--LRSICYLN 151
Query: 403 PGSSF 407
G F
Sbjct: 152 RGVCF 156
>At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP1)
contains Pfam PF00560: Leucine Rich Repeat domains;
identical to RAN GTPase activating protein 1
(GI:6708466)[Arabidopsis thaliana]
Length = 535
Score = 29.1 bits (62), Expect = 7.3
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 316 KNSSLSKQSKHSEGNKGES-VQISVDGPEIIELSASTAAVPSTQENRVLLDPTEQGRNSH 374
K SS G + ES V++S DG ++S + A +E R LL P RNS+
Sbjct: 90 KESSKLMLDVIKRGPQEESEVEVSKDGDVFFDISGGSRAFIEEEEARDLLRPLADPRNSY 149
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 29.1 bits (62), Expect = 7.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 304 KSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIEL--SASTAAVPSTQENR 361
+S ER T +I+ + LS Q S K S+QI D P I+ S + +
Sbjct: 213 ESPERIFTGTIIGSGDLSSQWPAS---KWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSA 269
Query: 362 VLLDPTEQGRNSHRMSVIPEAIVEPLPQNLRTYFMQVCIFNPGSSFGFGENMRDR 416
+ PT+Q S R I E P+ + + F Q NP F + +R
Sbjct: 270 LTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSVKLLFQDPATER 324
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 29.1 bits (62), Expect = 7.3
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 304 KSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIEL--SASTAAVPSTQENR 361
+S ER T +I+ + LS Q S K S+QI D P I+ S + +
Sbjct: 300 ESPERIFTGTIIGSGDLSSQWPAS---KWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSA 356
Query: 362 VLLDPTEQGRNSHRMSVIPEAIVEPLPQNLRTYFMQVCIFNPGSSFGFGENMRDR 416
+ PT+Q S R I E P+ + + F Q NP F + +R
Sbjct: 357 LTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSVKLLFQDPATER 411
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 273 DESEQDLDTKYFGAYNNRRESRDSVESTSQRKSIERKRTESILKNSSLSKQSKHSEGNKG 332
DE++Q++ K + N+++ +D + ++K ++++ E K+ S K+ K +G KG
Sbjct: 236 DETDQEMKEK--DSKKNKKKEKDESCAEEKKKKPDKEKKE---KDESTEKEDKKLKGKKG 290
Query: 333 E 333
+
Sbjct: 291 K 291
>At1g76820.1 68414.m08939 expressed protein
Length = 266
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 288 NNRRESRDSVESTSQRKSIERKRTESILKN--SSLSKQSKHSEGNKGESVQ 336
+NR E+ D+ + S RK +K++ S+L + S QSK S+ E V+
Sbjct: 119 DNREEAEDNDITFSGRKKSSKKKSSSVLASIGDEESSQSKTSDSKSVELVE 169
>At1g61570.1 68414.m06938 mitochondrial import inner membrane
translocase (TIM13) identical to mitochondrial import
inner membrane translocase subunit Tim13 [Arabidopsis
thaliana] Swiss-Prot:Q9XH48; contains Pfam domain,
PF02953: Tim10/DDP family zinc finger
Length = 87
Score = 28.7 bits (61), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 379 IPEAIVEPLPQNLRTYFMQVCIFNPGSSFGFGEN 412
+ +A E L + LRT C+ PGSS G E+
Sbjct: 29 LAQAYAEELIETLRTKCFDKCVTKPGSSLGGSES 62
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,957
Number of Sequences: 28952
Number of extensions: 490715
Number of successful extensions: 1583
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 51
length of query: 508
length of database: 12,070,560
effective HSP length: 84
effective length of query: 424
effective length of database: 9,638,592
effective search space: 4086763008
effective search space used: 4086763008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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