GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001176-TA|BGIBMGA001176-PA|undefined
         (169 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.58 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.58 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 95   QLNSEQKSL--INHYNESYKEKFGFPFIVCARENKVASILEGLQIRLKNSSFQEYQTA 150
            QL   Q+SL  +N   ES  EK  +P +     + V + +EG +  +KN+    Y  A
Sbjct: 1101 QLRKIQESLRDLNRKIESL-EKMQYPDLRSPAVSNVTTFMEGSKATVKNNVEDNYMEA 1157


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 95   QLNSEQKSL--INHYNESYKEKFGFPFIVCARENKVASILEGLQIRLKNSSFQEYQTA 150
            QL   Q+SL  +N   ES  EK  +P +     + V + +EG +  +KN+    Y  A
Sbjct: 1101 QLRKIQESLRDLNRKIESL-EKMQYPDLRSPAVSNVTTFMEGSKATVKNNVEDNYMEA 1157


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 79  ELTPESTKEQNSAGLNQLNSEQKSLINHYNESYK 112
           EL  ++ K  + +  N  +SE+KS I H ++++K
Sbjct: 242 ELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHK 275


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,191
Number of Sequences: 317
Number of extensions: 1615
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 169
length of database: 114,650
effective HSP length: 53
effective length of query: 116
effective length of database: 97,849
effective search space: 11350484
effective search space used: 11350484
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)