GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001176-TA|BGIBMGA001176-PA|undefined
         (169 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0213 + 15481691-15481837,15482759-15482860,15483169-154833...    42   2e-04
09_02_0610 - 11206198-11206588,11206812-11207001,11207116-112071...    30   0.85 
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709...    30   1.1  
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697...    29   1.5  
04_04_1489 - 33938426-33939363,33939429-33939813                       28   4.5  
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076...    27   7.9  

>03_03_0213 +
           15481691-15481837,15482759-15482860,15483169-15483328,
           15484140-15484603
          Length = 290

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 107 YNESYKEKFGFPFIVCARENKVASILEGLQIRLKNSSFQEYQTALNEVKKICRYRI 162
           +N  Y+EKFGF F++CA       +L  L+ R +N    E + A  E  KI   R+
Sbjct: 54  WNARYREKFGFVFMICASGRTAPEVLAELKRRYENRPIVELEIAAQEELKITELRL 109


>09_02_0610 -
           11206198-11206588,11206812-11207001,11207116-11207184,
           11207546-11207672,11207809-11208128,11208196-11208353,
           11208503-11208580,11209484-11209555,11209994-11210135,
           11212580-11213064,11214362-11214947,11215093-11215177
          Length = 900

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 1   MVWQDGGIYLCGLTIRLTNARWSSQYAAAIEVGKKRPFNNSTELCAAFDNYLEELSTAEK 60
           +V Q GGI      + +  ARW+   A  + VG   PF +S EL    D     + T+E 
Sbjct: 149 VVVQTGGISRMYEVVFMGWARWAP--ACLVNVGGGTPFVSSVELRPIDDELYPSVKTSES 206

Query: 61  NKVFK 65
             +FK
Sbjct: 207 LSLFK 211


>02_05_1335 -
           35770403-35770543,35770630-35770755,35770859-35770942,
           35771444-35771656,35771759-35771977
          Length = 260

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 60  KNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQLNSEQKSLINHYNE 109
           ++ VF    DL     ++ +L  EST   N+AGL +   E++++++ YN+
Sbjct: 52  QDHVFVLEEDLRAAARRIEQLKAEST--MNAAGLRRCIEEKETMVSAYND 99


>06_03_0287 -
           19168685-19168735,19168847-19168884,19169517-19169727,
           19171461-19171643,19171879-19172028,19172161-19172256,
           19172378-19172464,19172535-19172741,19172823-19173047,
           19173150-19173261,19173397-19173453,19175522-19176882
          Length = 925

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 30  IEVGKKRPFNNSTELCAAFDNYLEELSTAEKNKVFKFHPDL 70
           I+  KKRP  +   +C   +  L + + AE NK+ KFHP +
Sbjct: 523 IDCDKKRPPISVVVVCPTRE--LADQAAAEANKLLKFHPSI 561


>04_04_1489 - 33938426-33939363,33939429-33939813
          Length = 440

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 75  SQMGELTPESTKEQNSAGLNQLNSEQKSLINHYNESYKEKFGF 117
           S M  +TP S   +++   +++  + KS +N  NE  +E+  F
Sbjct: 110 SDMSRMTPASLLGRSTPMTSEVEDKSKSKVNEVNEDLEEEMVF 152


>03_05_1154 +
           30803983-30806047,30806152-30806968,30807362-30807655,
           30808214-30808451
          Length = 1137

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 13  LTIRLTNARWSSQYAA-AIEVGKKRPFNNSTELCAAFDNYLEELSTAEKNKVFKFHPDLA 71
           L +  T A  S + AA AI   +  P  N + LC      + EL+  ++   +KFH D  
Sbjct: 189 LPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEH 248

Query: 72  GKI 74
           G++
Sbjct: 249 GEV 251


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,739,873
Number of Sequences: 37544
Number of extensions: 170134
Number of successful extensions: 420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 6
length of query: 169
length of database: 14,793,348
effective HSP length: 77
effective length of query: 92
effective length of database: 11,902,460
effective search space: 1095026320
effective search space used: 1095026320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)