GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001176-TA|BGIBMGA001176-PA|undefined
         (169 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-10|AAK39162.2|  307|Caenorhabditis elegans Hypothetical p...    31   0.57 
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    30   0.75 
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    29   2.3  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    29   2.3  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    29   2.3  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    29   2.3  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    29   2.3  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    29   2.3  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    29   2.3  
L13200-6|AAZ32790.1|  189|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    27   9.3  

>U23529-10|AAK39162.2|  307|Caenorhabditis elegans Hypothetical
           protein C15B12.6 protein.
          Length = 307

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 16/71 (22%), Positives = 32/71 (45%)

Query: 56  STAEKNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQLNSEQKSLINHYNESYKEKF 115
           S  + N   K  P+     +    +   +T  + +  ++ +N+ +K L+ HY  + KEK 
Sbjct: 139 SYIDSNSYLKNVPEPMFAFADTDSMASTTTFSEYAEPVHSMNARKKILLLHYETTSKEKE 198

Query: 116 GFPFIVCAREN 126
            F +  C  +N
Sbjct: 199 DFKWFKCNLKN 209


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 27  AAAIEVGKKRPFNNSTELCAAFDNYLEELSTAEKNKVFKFHPDLAGKISQMGELTPES 84
           A ++EV KK   N++ E  +  +   EE ST+ K KV K + D  G I    +  P++
Sbjct: 123 APSVEVAKKEEENDTVEESSDDEEIEEEKSTSPK-KVAKVNADDEGSIQDAKDQAPQA 179


>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical
           protein H08M01.2b protein.
          Length = 1341

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 94  NQLNSEQKSLINHYNESYKEKFGFPFIVCARENKVASI--LEGLQIRLKNSSFQEYQTAL 151
           N+ N E  S  + +N+  K +     ++     KV     L  L +RLK+   QE++  L
Sbjct: 400 NEYNLEMWSPPSSFNKDEKSRLPSEILLLPEAAKVFEQFRLSTLNLRLKHQLGQEFEYLL 459

Query: 152 NEVKKI 157
           NE+ +I
Sbjct: 460 NEIPQI 465


>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical
           protein H08M01.2a protein.
          Length = 1320

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 94  NQLNSEQKSLINHYNESYKEKFGFPFIVCARENKVASI--LEGLQIRLKNSSFQEYQTAL 151
           N+ N E  S  + +N+  K +     ++     KV     L  L +RLK+   QE++  L
Sbjct: 400 NEYNLEMWSPPSSFNKDEKSRLPSEILLLPEAAKVFEQFRLSTLNLRLKHQLGQEFEYLL 459

Query: 152 NEVKKI 157
           NE+ +I
Sbjct: 460 NEIPQI 465


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 24   SQYAAAIEVGKKRPFNNSTELCAAFDNYLEELSTAEKNK 62
            S Y  A+E    +PF    +LC     Y+++L  A++ K
Sbjct: 1282 SLYGGALEDSSAKPFLECVKLCMPVHKYMKKLKEAQEAK 1320


>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 34  KKRPFNNSTELCAAFDNYLEELSTAEKNKVFKFHPDLAGKISQMGELTPESTKEQNSAGL 93
           K   F+N+T       N        +KN++ ++  +L     Q    TP +T   N    
Sbjct: 448 KLEEFHNATSNLNVEPNIWHVTPGKDKNRIDRYQSELDSSKQQS---TPTATIAVNI--- 501

Query: 94  NQLNSEQKSLINHYNESYKEKFGFPFI 120
            + NSEQ  + NH      E +GF  +
Sbjct: 502 -RRNSEQSQVENHSGHFQNEDYGFSLV 527


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 39   NNSTELCAAFDNYLE-ELSTAE--KNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQ 95
            N    LC  +DN  E E   AE  +N + KF      K S+         KE+N   + +
Sbjct: 1473 NQQCGLCGHYDNEKETEFYDAENQENTIPKFAKSYLYKDSKCNYEREMFEKEENFQRIEK 1532

Query: 96   LNSEQKSLINHYNESYKEKFGFP---FIVCARENKVASILEGLQIRLKNSSFQE 146
               E+K    +Y ES +E+   P     +  R++++    + + +R +N   QE
Sbjct: 1533 NQEEEKDQEMNYEESRREQDDEPTEQVAIVERQHEICFTQKPV-LRCQNGKSQE 1585


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 19  NARWSSQYAAAIEVGKKR-PFNNSTELCAAFDNYLE-------ELSTAEKNKVFKFHPDL 70
           + R SS++  + +V   + P N+  +  +  D +++       E+ T EK+   K     
Sbjct: 82  DGRKSSEHTNSYDVSASQSPSNDGAQSDSTSDEHIDVECMTETEMDTDEKDSTIKPEDQA 141

Query: 71  AGKISQMGELTPESTKEQNSAGLNQLNSE 99
             K+ +  +  PEST  + ++   Q+ SE
Sbjct: 142 TPKLEEGSDSKPESTSVEGTSSNYQVTSE 170


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 19  NARWSSQYAAAIEVGKKR-PFNNSTELCAAFDNYLE-------ELSTAEKNKVFKFHPDL 70
           + R SS++  + +V   + P N+  +  +  D +++       E+ T EK+   K     
Sbjct: 104 DGRKSSEHTNSYDVSASQSPSNDGAQSDSTSDEHIDVECMTETEMDTDEKDSTIKPEDQA 163

Query: 71  AGKISQMGELTPESTKEQNSAGLNQLNSE 99
             K+ +  +  PEST  + ++   Q+ SE
Sbjct: 164 TPKLEEGSDSKPESTSVEGTSSNYQVTSE 192


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 19  NARWSSQYAAAIEVGKKR-PFNNSTELCAAFDNYLE-------ELSTAEKNKVFKFHPDL 70
           + R SS++  + +V   + P N+  +  +  D +++       E+ T EK+   K     
Sbjct: 104 DGRKSSEHTNSYDVSASQSPSNDGAQSDSTSDEHIDVECMTETEMDTDEKDSTIKPEDQA 163

Query: 71  AGKISQMGELTPESTKEQNSAGLNQLNSE 99
             K+ +  +  PEST  + ++   Q+ SE
Sbjct: 164 TPKLEEGSDSKPESTSVEGTSSNYQVTSE 192


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            a protein.
          Length = 1650

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 39   NNSTELCAAFDNYLE-ELSTAE--KNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQ 95
            N    LC  +DN  E E   AE  +N + KF      K S+         KE+N   + +
Sbjct: 1473 NQQCGLCGHYDNEKETEFYDAENQENTIPKFAKSYLYKDSKCNYEREMFEKEENFQRIEK 1532

Query: 96   LNSEQKSLINHYNESYKEKFGFP---FIVCARENKVASILEGLQIRLKNSSFQE 146
               E+K    +Y ES +E+   P     +  R++++    + + +R +N   QE
Sbjct: 1533 NQEEEKDQEMNYEESRREQDDEPTEQVAIVERQHEICFTQKPV-LRCQNGKSQE 1585


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            c protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 39   NNSTELCAAFDNYLE-ELSTAE--KNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQ 95
            N    LC  +DN  E E   AE  +N + KF      K S+         KE+N   + +
Sbjct: 1473 NQQCGLCGHYDNEKETEFYDAENQENTIPKFAKSYLYKDSKCNYEREMFEKEENFQRIEK 1532

Query: 96   LNSEQKSLINHYNESYKEKFGFP---FIVCARENKVASILEGLQIRLKNSSFQE 146
               E+K    +Y ES +E+   P     +  R++++    + + +R +N   QE
Sbjct: 1533 NQEEEKDQEMNYEESRREQDDEPTEQVAIVERQHEICFTQKPV-LRCQNGKSQE 1585


>L13200-6|AAZ32790.1|  189|Caenorhabditis elegans Hypothetical
           protein ZK1236.9 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 39  NNSTELCAAFD--NYLEELSTAEKNKVFKFHPDLAGKISQMGE-LTPESTKEQNSAGLNQ 95
           +NS E  + F   NY+E+ +++   +  +      G++   GE L P   K      L +
Sbjct: 34  SNSEERISQFTLPNYVEQPTSSINQQTGRVVKKAQGEVDLSGEELMPFLYKAAER--LRE 91

Query: 96  LNSEQKSLINHYNESYKEKFGFPFIVCARENKVASILEGLQIRLKNSSFQEYQTALNEVK 155
           +  +Q        E  K +FG    + + E     +++ L   + +  F++YQ A+N   
Sbjct: 92  MKDKQTKA-----EGIKLRFGSLAKLISEEKLSDELIKSLNYVVDSLEFEKYQEAMNYYD 146

Query: 156 KICR 159
           + C+
Sbjct: 147 QFCK 150


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 30  IEVGKKRPFNNSTELCAAFDNYLEELSTAEKNK-VFKFHPDLAGKISQMGELTPESTKEQ 88
           IE   K     + EL    +   E+  T E  K +   HP+LA +I    E T    KE+
Sbjct: 7   IEKFLKTVAEKNPELIEGVEGNSEDFKTDEFEKNLVDLHPELAEEICDFDERTVREEKEK 66

Query: 89  NSAGLNQLNSEQ 100
             +   Q    Q
Sbjct: 67  TISKKQQARDRQ 78


>Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical
           protein K06B4.6 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 50  NYLEELSTAEKNKVFKFHPDLAG 72
           N++ EL +++KN +FK++   AG
Sbjct: 174 NFIRELDSSDKNTLFKYNVSRAG 196


>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 132 LEGLQIRLKNSSFQEYQTALNEVKKICR 159
           L+GL   +   S +E Q ALNE K +C+
Sbjct: 96  LDGLLTEIIEESEEEMQKALNEKKTLCQ 123


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,276,517
Number of Sequences: 27539
Number of extensions: 165684
Number of successful extensions: 513
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 19
length of query: 169
length of database: 12,573,161
effective HSP length: 76
effective length of query: 93
effective length of database: 10,480,197
effective search space: 974658321
effective search space used: 974658321
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)