Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001176-TA|BGIBMGA001176-PA|undefined
(169 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58220.1 68418.m07289 expressed protein 53 9e-08
At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to MAD... 39 0.002
At5g64980.1 68418.m08173 expressed protein 36 0.014
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 31 0.31
At1g22260.1 68414.m02782 expressed protein 30 0.71
At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containi... 30 0.94
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i... 28 2.9
At4g12540.1 68417.m01979 expressed protein 28 3.8
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 27 5.0
At5g13600.1 68418.m01574 phototropic-responsive NPH3 family prot... 27 5.0
At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase, mitoc... 27 5.0
At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase, mitoc... 27 5.0
At5g47690.1 68418.m05887 expressed protein 27 6.6
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 27 8.7
At2g16400.1 68415.m01877 homeodomain-containing protein 27 8.7
>At5g58220.1 68418.m07289 expressed protein
Length = 324
Score = 53.2 bits (122), Expect = 9e-08
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 23 SSQYAAAIEVGKKRPFNNSTELCAAFDNYLEELSTAEKNKVFKFHPDLAGKISQM--GEL 80
SS++A ++ P + + A D + +++ + + F HP + S +
Sbjct: 16 SSEFAK--QMSTSGPLTSQEAIYTARDIWFNQVNVTDWLEAFSAHPQIGNTPSPSINSDF 73
Query: 81 TPESTKEQNSAGLNQLNSEQKSLINHYNESYKEKFGFPFIVCARENKVASILEGLQIRLK 140
S EQ++A S + L +N YK+KFGF FI+CA A +L L+ R +
Sbjct: 74 ARRSVSEQSTAFATTSASALQELAE-WNVLYKKKFGFIFIICASGRTHAEMLHALKERYE 132
Query: 141 NSSFQEYQTALNEVKKICRYRI 162
N E + A E KI R+
Sbjct: 133 NRPIVELEIAAMEQMKITELRM 154
>At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to
MADS-box protein; PMID: 12837945; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 260
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 40 NSTELCAAFDNYLEELSTAEKNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQLNSE 99
N +LC D YL+EL + + + H + +TP S E + + + N
Sbjct: 134 NREDLCKYIDQYLKELYHHKNKTINQSHIEPGESSGATNAMTPTSVVEPIISSIQRPNQN 193
Query: 100 QK-SLINHYNESYKEKFGFPFIV 121
+ ++H Y+++FG+P +V
Sbjct: 194 PNFNHLSHNQYQYQQQFGYPILV 216
>At5g64980.1 68418.m08173 expressed protein
Length = 344
Score = 35.9 bits (79), Expect = 0.014
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 22 WSSQYAAAIEVGKKRPFNNSTELCAAFDNYLEELSTAEKNKVFKFHPD----LAGKISQM 77
WS Y+ + KKR NN+ + FDN ++ ST NK + + +A I +
Sbjct: 182 WSPDYSEKLRSWKKRSNNNNRDFSQLFDNDIDVPST-RSNKCYTNERERKQRIADNIKAL 240
Query: 78 GELTPESTKEQN-SAGLNQLNSEQKSLINHYNESYKEKFG 116
G+L P + N LN + K L E + + G
Sbjct: 241 GKLLPHKVEGDNHELTLNAMVDHVKLLHLQMKELSRSRLG 280
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 31.5 bits (68), Expect = 0.31
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 51 YLEELSTAEKNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQLNSEQKSLINHYNE- 109
+L+E+ +++ FH +L Q+ TK++ A +N+L++EQK+ I+ E
Sbjct: 280 HLQEIKQIKESTAKSFHNELIELRDQL------DTKQKELAQVNKLSAEQKNSIDELGER 333
Query: 110 ---SYKEKFGFPFIVCARENKVASILEGLQIRLKNSSFQEYQTALNEVK 155
S + ++ +++ +A + GL +N +E +TA+ E+K
Sbjct: 334 VSASLQTLSEANEVIQSQKASIAELKTGLD-EERNQRREERETAIAELK 381
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 30.3 bits (65), Expect = 0.71
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 43 ELCAAFDNYLEELSTAEKNKVFKFHPDLAGKISQMGELTPESTKEQNSAGLNQLNSEQKS 102
E+ +D E+ +EK+KV K DL+ K + EL+ KE++ L + E S
Sbjct: 565 EIRRKYDVEKHEIINSEKDKVEKIIKDLSNKFDK--ELS--DCKEESKRQLLTIQEEHSS 620
Query: 103 LINHYNESYKEK 114
LI E ++ K
Sbjct: 621 LILSLREEHESK 632
>At1g30610.1 68414.m03744 pentatricopeptide (PPR)
repeat-containing protein contains Pfam profile
PF01535: PPR repeat
Length = 1006
Score = 29.9 bits (64), Expect = 0.94
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 9 YLCGLTIRLTNARWSSQYAAAI-----EVGKKRPFNNSTELCAAFDNYL---EELSTAEK 60
Y C +RL + + +S+ + EVG ++P + E +FD YL E + TA K
Sbjct: 33 YNCRRVVRLNSRKLNSKVMFCLNLNTKEVGLQKPGDKGFEFKPSFDQYLQIMESVKTARK 92
Query: 61 NKVF 64
K F
Sbjct: 93 KKKF 96
>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
identical to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 439
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 87 EQNSAGLNQLNSEQKSLINHYNESYKEKFGFPFIVCARE-NKVASILEGLQIRLKNSSFQ 145
+Q S+ L+ N E + + +S K+ G P + N + +L+ + NSSF+
Sbjct: 99 DQGSSVLSLTNPEVERTVVDSKQSAKKSTGTPSVRSESSWNSQSVLLQNKLVNSCNSSFK 158
Query: 146 EYQTALNEVKKI 157
E + + +++K+
Sbjct: 159 EKKNSNGQIQKV 170
>At4g12540.1 68417.m01979 expressed protein
Length = 461
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 53 EELSTAEKNKVFKFHPDLAGKISQMGELTPESTKEQ 88
EE + E +++F H D+ + Q+ EL E+TK +
Sbjct: 21 EEYNDCELDQLFLVHSDIRSVLLQIDELVVEATKRK 56
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
SP|P14714 Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 37 PFNNSTELCAAFDNYLEELSTAEKNKVFKFHPDLAGKI 74
P N LC A + EL+ ++ V+KFH D G++
Sbjct: 210 PSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEV 247
>At5g13600.1 68418.m01574 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000; contains
BTB/POZ domain, Pfam:PF00651
Length = 591
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 32 VGKKRPFNNSTELCAAFDNYLEELSTAEKNKVFKF 66
+G P + T++ + D YL E+++ E K+ KF
Sbjct: 381 MGDSHPLKSITKVASLIDGYLAEVASDENLKLSKF 415
>At2g43430.2 68415.m05397 hydroxyacylglutathione hydrolase,
mitochondrial / glyoxalase II (GLX2-1) identical to
SP|O24495 Hydroxyacylglutathione hydrolase,
mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II)
(Glx II) {Arabidopsis thaliana}
Length = 313
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 120 IVCARENKVASILEGLQIRLKNSSFQEYQTALNEVK 155
I C REN ++ L + KN + Q Y T + ++
Sbjct: 224 IYCGRENTAGNLKFALSVEPKNETLQSYATRVAHLR 259
>At2g43430.1 68415.m05398 hydroxyacylglutathione hydrolase,
mitochondrial / glyoxalase II (GLX2-1) identical to
SP|O24495 Hydroxyacylglutathione hydrolase,
mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II)
(Glx II) {Arabidopsis thaliana}
Length = 331
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 120 IVCARENKVASILEGLQIRLKNSSFQEYQTALNEVK 155
I C REN ++ L + KN + Q Y T + ++
Sbjct: 242 IYCGRENTAGNLKFALSVEPKNETLQSYATRVAHLR 277
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 124 RENKVASILEGLQIRLKNSSFQEYQTALNEVKKICRYRIYDI 165
RE++V + ++LK+ + + + + ++ +IC+ +IY I
Sbjct: 763 RESEVVEFIRSKILKLKSETVDDKKLSWDDKSEICQLKIYGI 804
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 52 LEELSTAEKNKVFKFHPDLAGKISQMGELTPESTKEQNS 90
+EE+S AE NK FK + AG + + E+N+
Sbjct: 515 VEEMSRAEGNKTFKGFEESAGFFASFMAMNQSRRDEENN 553
>At2g16400.1 68415.m01877 homeodomain-containing protein
Length = 482
Score = 26.6 bits (56), Expect = 8.7
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 12 GLTIRLTNARWSS--QYAAAIEVGKKRPFNNSTELCAAFDNYLEELSTAEKNKVFKFHPD 69
GL+ ++ +R ++ +YA + G R +NS L AA L+E +K + +F P+
Sbjct: 87 GLSSQIETSRGNNNNEYATQVVSGFTRTIHNSKYLKAA-QELLDETVNVKK-ALKQFQPE 144
Query: 70 LAGKISQMGELTPE-STKEQNSAGLNQLNSEQK---SLINHYNESYKEKF 115
KI+++ E + +T E A +L S+ S+++ + +YK+ +
Sbjct: 145 -GDKINEVKEKNLQTNTAEIPQAERQELQSKLSKLLSILDEVDRNYKQYY 193
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,033,619
Number of Sequences: 28952
Number of extensions: 153162
Number of successful extensions: 519
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 17
length of query: 169
length of database: 12,070,560
effective HSP length: 76
effective length of query: 93
effective length of database: 9,870,208
effective search space: 917929344
effective search space used: 917929344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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