GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001175-TA|BGIBMGA001175-PA|IPR008383|Apoptosis
inhibitory 5
         (468 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   5.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   9.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 148 TDGELANEIVRERCIKFLSSKIQQLGREIINKEAEEL 184
           TD +L NE    R  + LS K Q LG    + + EEL
Sbjct: 12  TDYDLENEFNINRPRRKLSKKQQMLGIWADDSDEEEL 48


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 117 EINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELAN 154
           E+NV   SL + LK+     +SG+  Q  Q    EL++
Sbjct: 92  EVNVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSH 129


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 134 KGAL--SGIFSQIHQNTDGELANEIVRERCIKFLSSKIQQLGREIINKEAEELIITECKK 191
           KG L  SGI S   ++   +  N I++ +     S  +Q LG + +    +E++  E  K
Sbjct: 348 KGCLLVSGIASAKVRSMFNDSGNPILKAKP----SEVVQILGWKELPNVGDEILEVENDK 403

Query: 192 ILEDVVAEEFEHIMELL 208
           IL++V+    +   E+L
Sbjct: 404 ILQEVIKFRQKQRAEIL 420


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 231 AFSPDDWHPEDPEYIDRLIQCTQHAVP 257
           A  P    PED   +DR+  C  H  P
Sbjct: 369 AMKPLVRQPEDTMSVDRMQHCELHMQP 395


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 231 AFSPDDWHPEDPEYIDRLIQCTQHAVP 257
           A  P    PED   +DR+  C  H  P
Sbjct: 369 AMKPLVRQPEDTMSVDRMQHCELHMQP 395


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 95   HKEHTQRIADILAQLLQSEDSTEINVVTNSL 125
            H++  Q+   ILA++L S +S ++  V N L
Sbjct: 1103 HQQQQQQQQKILAKVLTSSNSGQLISVENLL 1133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,936
Number of Sequences: 429
Number of extensions: 4250
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 468
length of database: 140,377
effective HSP length: 60
effective length of query: 408
effective length of database: 114,637
effective search space: 46771896
effective search space used: 46771896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)