Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001174-TA|BGIBMGA001174-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
(218 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 29 3.0
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 5.2
SB_24982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09) 28 6.9
SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 9.1
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 150 LKNLIWLLSRHYPERLGVCLIINAPTFFSGCWTVIKGWLDENTAGK 195
L +I ++ +YPE +G LI+ AP F WT++ ++DENT K
Sbjct: 5 LLRVIEMVEVNYPETMGRLLIVRAPRIFGVLWTLVSPFIDENTRNK 50
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/58 (18%), Positives = 27/58 (46%)
Query: 10 EEDLKQLKERMNLIASADPAQYHNSYSLKRYLRAFHTAILKTNKWRVEYGVADLHNNK 67
+E + L R ++ + A HN +R L+ F + K W ++ ++++ ++
Sbjct: 1034 KETMNTLNTRWKVVRTGVDAHMHNLSECQRLLQQFEESARKVRTWTIDSNISEISEDE 1091
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 1 MAEELKPVNEEDLKQLKERMNLIAS--ADPAQYHNSYSLKRYLRAFHTAILKTNKWRVEY 58
++EEL N E ++ER +A A + NS S K +K +K R +
Sbjct: 1809 LSEELMRANNEKEDIIRERETTVADLEAQIIELTNSVSTKEKSVTQEIETIKRDKERADK 1868
Query: 59 GVADLHNNKELIEK 72
+ L +NK+ +EK
Sbjct: 1869 EMEQLRSNKKNLEK 1882
>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 26 ADPAQYHNSYSLKRYLRAFHT---AILKTNKWRVEYGVADLHNNK 67
A PAQ H+S+S+ +Y R+F T ++ T V +G+ + N++
Sbjct: 177 ASPAQRHHSFSVSKYKRSFATMLYVVVFTVLCYVPFGLVSVLNDR 221
>SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 16 LKERMNLIASADP-AQYHNSYSLKRYLRAFHTAILKTNKWRVEYGVADLHNNKELIEKYS 74
L+E++ LI A+ A Y N + L+ H A W+ + G +E+ +K+S
Sbjct: 56 LEEKLKLIERAETLATYENVNDAFKELQQLHKA------WKEDVGPVSKEQREEVWQKFS 109
Query: 75 DKAKVLRHR 83
D +K + R
Sbjct: 110 DASKKVHDR 118
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/69 (30%), Positives = 29/69 (42%)
Query: 42 RAFHTAILKTNKWRVEYGVADLHNNKELIEKYSDKAKVLRHRDAIGRPIIYIPAKNYNSS 101
+ FH + K N EY N +ELIE + D + ++ R+A G I I N
Sbjct: 578 KVFHKPMKKMNIMPYEYIKKLFPNLQELIEIHGDLLQSMKKREAEGEVIQCIGDIMLNRF 637
Query: 102 DRNIDELTK 110
D E K
Sbjct: 638 DNEAGEAAK 646
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 120 SNKCFEEVVDNLCIVFDLNNFTLSCMDYQILKN 152
SN CF+ V LC++ N +C D L N
Sbjct: 2885 SNPCFKHVCTGLCLLTPQGNHRCACADNMHLAN 2917
>SB_24982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 36 SLKRYLRAFHTAILKTNKWRVEYGVADLHNNKELIEKYSDK 76
S++ +L FHT + N +++Y +L KE + K+S +
Sbjct: 81 SMRVFLLQFHTGFINPNATKLKYSREELDIAKEDVVKFSSR 121
>SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)
Length = 868
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 96 KNYNSSDRNIDELTKFIVYCLEVASNKCFEEVVDNLCIVFDLNNFTLSCMDYQILKNLIW 155
K Y N++++ + V+ ++ ++ E V+D L V L L +++ L + I+
Sbjct: 653 KQYFQEKPNLNQILNWCVFDCDLDDDEVREHVLDTLVDVVVLLMKVLRRNEFEALFSRIY 712
Query: 156 LLSRHYPERLGVCLIINAPTFFSGC 180
LS R C+I C
Sbjct: 713 HLSSRNKARAVTCVIFLGANIVLSC 737
>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 29 AQYHNSYSLKRYLRAFHTAILKTNKWR----VEYGVADLHNNKELIEKY----SDKAKVL 80
A+Y L RY + +H +L+T WR EYG L ++ L+ +Y D ++ +
Sbjct: 569 ARYRKGCPLARYRKGYHPELLQT--WRRAGPFEYG-NRLQDSPHLVRRYYLFAGDDSQNI 625
Query: 81 RHRDAIGRPIIYIP 94
+ G P++ +P
Sbjct: 626 QVHFKSGFPVVTVP 639
>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 1127
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 90 IIYIPAKNYNSSDRNIDELTKFIVYCLEVASNKCFEEVVDNLCIVFDLN 138
+ Y+P +Y SS R + +F + +AS+ + +L VF N
Sbjct: 194 LFYVPVVDYLSSSRLLSNRIRFKYFLRTIASDSLLSRAIVDLLRVFRWN 242
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,625,546
Number of Sequences: 59808
Number of extensions: 305687
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 11
length of query: 218
length of database: 16,821,457
effective HSP length: 79
effective length of query: 139
effective length of database: 12,096,625
effective search space: 1681430875
effective search space used: 1681430875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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