GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001174-TA|BGIBMGA001174-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (218 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 134 VFDLNNFTLSCMDYQILK 151
           +FD+N   L+CM  ++LK
Sbjct: 111 IFDINLLGLTCMIQEVLK 128


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 124 FEEVVDNLCIVFDLNNFTLSCMDYQILK 151
           FE ++  L  +FD    ++ C++ Q+LK
Sbjct: 276 FEVLLVRLACMFDAQTNSMICLNGQVLK 303


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 90  IIYIPAKNYNSSDRNIDE 107
           IIY+ AK +   D NID+
Sbjct: 262 IIYLSAKGHRPIDDNIDD 279


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 98  YNSSDRNIDELT 109
           YN S RN+D+LT
Sbjct: 470 YNGSFRNLDQLT 481



 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 13  LKQLKERMNLIASADPAQYHNSYSLK 38
           L +L    N IAS DP  + N   LK
Sbjct: 409 LNRLTLSGNAIASIDPLAFRNCSDLK 434


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 75  DKAKVLRHRDAIGRPIIYIPAKNYNSSDRNIDELTKFIVYCLEVASNKCFEEVVDNLCIV 134
           +K+K   H +     +  +  ++ NS + N  +   FIV  L     +C  +   N+C+ 
Sbjct: 60  EKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSNVCLK 119

Query: 135 F-DLNNFTLSCMDYQILKN 152
           F +      S  D +IL+N
Sbjct: 120 FEEQKRRKKSLDDVKILRN 138


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,091
Number of Sequences: 429
Number of extensions: 3270
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 218
length of database: 140,377
effective HSP length: 55
effective length of query: 163
effective length of database: 116,782
effective search space: 19035466
effective search space used: 19035466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)